1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaaggtggattttgtcttttaaatgtttcaagaacaacatagcagccatgaaagaattatttgcatatctgcctatacataatgagagttttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAGGCCATCAAGTGAAGCTGATCTTGATGACGAAGATGATCCGGATTTGAGC
species | Vitis vinifera |
transcript | Vv05s0049g01000.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA GGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGAGATGGAAAGCGAATTAGEST: gi|30251462|gb|CB969195.1|CB969195
genomic: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACAgtaagtgaag ... ttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAG
EST: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA GGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGAGATGGAAAGCGAATTAGEST: gi|351019104|gb|FQ429264.1|FQ429264
genomic: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACAgtaagtgaag ... ttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAG
EST: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA GGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGAGATGGAAAGCGAATTAGEST: gi|351043109|gb|FQ451282.1|FQ451282
genomic: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACAgtaagtgaag ... ttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAG
EST: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA GGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGAGATGGAAAGCGAATTAGEST: gi|351026930|gb|FQ436583.1|FQ436583
genomic: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACAgtaagtgaag ... ttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAG
EST: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA GGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGAGATGGAAAGCGAATTAGEST: gi|351026635|gb|FQ436288.1|FQ436288
genomic: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACAgtaagtgaag ... ttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAG
EST: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA GGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGAGATGGAAAGCGAATTAGEST: gi|30325386|gb|CD008648.1|CD008648
genomic: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACAgtaagtgaag ... ttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAG
EST: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA GGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGAGATGGAAAGCGAATTAGEST: gi|30327540|gb|CD010802.1|CD010802
genomic: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACAgtaagtgaag ... ttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAG
EST: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA GGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGAGATGGAAAGCGAATTAGEST: gi|110364060|gb|EC927702.1|EC927702
genomic: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACAgtaagtgaag ... ttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAG
EST: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA GGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGAGATGGAAAGCGAATTAGEST: gi|32269991|gb|CD719150.1|CD719150
genomic: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACAgtaagtgaag ... ttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAG
EST: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA GGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGAGATGGAAAGCGAATTAGEST: gi|32269556|gb|CD718715.1|CD718715
genomic: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACAgtaagtgaag ... ttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAG
EST: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA GGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGAGATGGAAAGCGAATTAGEST: gi|30251536|gb|CB969269.1|CB969269
genomic: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACAgtaagtgaag ... ttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAG
EST: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA GGGGAAGCCAAAAAAGGGAAGAACAGCCCCAAGAGATGGAAAGCGAATTAGEST: gi|349822500|gb|FQ412764.1|FQ412764
genomic: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACAgtaagtgaag ... ttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAG
EST: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA GGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGAGATGGAAAGCGAATTACEST: gi|30303048|gb|CB979842.1|CB979842
genomic: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACAgtaagtgaag ... ttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAG
EST: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA GGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGAGATGGAAAGCGAATTAGEST: gi|32247601|gb|CD713420.1|CD713420
genomic: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACAgtaagtgaag ... ttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAG
EST: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA GGGGAAGCCAAAAAAGGGAAGAA-AGCACCAAGAGATGGAAAGCGAATTAG
genomic: GATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACAgtaagtgaag ... ttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAG
ccatgaaagaattatttgcatatctgcctatacataatgagagttttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAGGCCATCAAGTGAAGCTGATCTTGATGACGAAGATGATCCGGATTTGAGC
ttttctctct CT-rich tract
aattatttgcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaggtggattttgtcttttaaatgtttcaagaacaacatagcagccatgaaagaattatttgcatatctgcctatacataatgagagttttctctctagGGGGAAGCCAAAAAAGGGAAGAACAGCACCAAGGGATGGAAAGCGAATTAGGCCATCAAGTGAAGCTGATCTTGATGACGAAGATGATCCGGATTTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - -gaacaac
- - - - - - - - - - - - - - - - - - - - - - -ccatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaga