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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aactttttgattatgagtctatagtttaattaatttatttgttaatttaattgtttgttcttttctttcctttcctttccttttcttggttgaaattcagGACTGGGACACACAAAATGGATCACAAATTGTCACTGAACTCTGTGGTTTTGTGACTATTCTCTCTGGAACCTTTCTCCTTCACAAAACCAAGGATATGG

Basic information

species Vitis vinifera
transcript Vv05s0029g00620.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0029g00620.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G28580.1 (Glycine max), 3'ss of exon 8
-----aactttttgattatgagtctatagtttaattaatttatttgttaatttaattgtttgttcttttctttcctttcctttccttttcttggttgaaattcagGACTGGGACACACAAAATGGATCACAAATTGTCACTGAACTCTGTGGTTTTGTGACTATTCTCTCTGGAACCTTTCTCCTTCACAAAACCAAGGATATGG
      |||  ||  | || | | |     |||| |||| | || ||      | ||      |   ||        |  | | ||||  ||   ||  |  ||||| |||||||||||| ||| ||| |||||||  || ||  | ||||| ||| | || ||| | ||||| |||||||| |||||||||||||| |||||||
tgttagactcatttgt-attattatgagtcttaaataatatcttcgtcgga--agtttgcaaatggattgcaagtcattatctgctttatttatctgcta--cagGAATGGGACACACAAGATGCATCTCAAATTGCTACCGAGGTTTGTGGCTTTATCACAATTTTATCTGGGACCTTTCTTCTTCACAAAACCAAAGATATGG

upper sequence: Vv05s0029g00620.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G36550.1 (Glycine max), 3'ss of exon 8
aactttttgattatgagtctatagtttaattaatttatttgttaatttaattgtttgttcttttctttcctttcctttccttttcttggttgaaattcagGACTGGGACACACAAAATGGATCACAAATTGTCACTGAACTCTGTGGTTTTGTGACTATTCTCTCTGGAACCTTTCTCCTTCACAAAACCAAGGATATGG
             ||| | ||  | ||       ||||||  ||  || | |   ||   |  |   |  |  | |     |   |   |  | || ||||| ||||  |  ||  ||  | | || ||||  |||||  | |||||||||||||| ||  | ||||| ||||| |||||||||| ||| ||||||||||
------------gtgactatacggcttg------ttatttactaccttcaat-catgcaatagttaataatgacttgatggtggatgcatgtatatgcagGAATGGGCGAAGCAGGATTCAACGCAGATTGCTACTGAGTTGTGTGGTTTTGTGACAATATTATCTGGGACCTTCCTCCTTCACAGAACTAAGGATATGG

upper sequence: Vv05s0029g00620.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G23870.1 (Arabidopsis thaliana), 3'ss of exon 7
aactttttgattatgagtctatagtttaattaatttatttgttaatttaattgtttgttcttttctttcctttcctttccttttcttggttgaaattcagGACTGGGACACACAAAATGGATCACAAATTGTCACTGAACTCTGTGGTTTTGTGACTATTCTCTCTGGAACCTTTCTCCTTCACAAAACCAAGGATATGG
      |  |     | ||| || ||   ||   || ||| | || | |||     |||  ||  | |    ||  ||          ||   | | ||||| ||||   | || | ||||| | | ||||  || ||  | |||||||||||||| ||| | || ||||| ||||| |||||||| ||||| |||||||
-----gtcaaaatcaaatctctatttcctttttcttctttctcaagtaaataaacagtttcttaatatttcctctgtt----------gtgtgattacagGATTGGGCTTCTCAGAGTGGATTAAAGATTGCAACAGAGTTGTGTGGTTTTGTGACGATTTTATCAGGAACTTTTCTGCTTCACAAGACCAAAGATATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaattgtttgttcttttctttcctttcctttccttttcttggttgaaattcagGACTGGGACACACAAAATGGATCACAAATTGTCACTGAACTCTGTGGTTTTGTGACTATTCTCTCTGGAACCTTTCTCCTTCACAAAACCAAGGATATGG
        tttgttcttttctttc  CT-rich tract
               ttttcttt  TA-rich tract