Sequence
atgc intronic sequence ATGC exonic sequence...nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctaaagtaatagtgaattgtttactgttttgattgaaaatattatattgtgtggaactgcagCAAAGAACACATATTGGACGTGTTATTGGCTTTGTTCTTGCTATATGGGGCATATTGTTTTACTCCCGCCTATTGAGTACAATGACAGAACAATTCAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04630.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G35310.1 (Glycine max), 3'ss of exon 6
-------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctaaagtaatagtgaattgtttactgttttgattgaaaatattatattgtgtggaactgcagCAAAGAACACATATTGGACGTGTTATTGGCTTTGTTCTTGCTATATGGGGCATATTGTTTTACTCCCGCCTATTGAGTACAATGACAGAACAATTCAGA
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gtatgttgattttgttttggactttgtataccagttttttgtttacccctttcacattgtttgtaagc-attttctgtgtaaccaaataatat-actttttgttcttctacagCAAGCAACACGTGTTGAGCGTGTTATTGGCTTTCTTCTTGCAATATGGGGTATATTGTTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGG
upper sequence: Vv05s0020g04630.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G32300.1 (Glycine max), 3'ss of exon 6
-------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctaaagtaatagtgaat-tgtttactgttttgattgaaaatattatattgtgtggaact--gcagCAAAGAACACATATTGGACGTGTTATTGGCTTTGTTCTTGCTATATGGGGCATATTGTTTTACTCCCGCCTATTGAGTACAATGACAGAACAATTCAGA
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gtatgttgattttgttgtggactttgtaatccagttttttattcacctctttcacattgtttgtaagcattgttgtgtaaccaaataacatactttttgttcctccacagCAAACAACACGTGTTGAGCGTTTTATTGGTTTTCTTCTTGCAATATGGGGTATATTGTTTTACACTCGACTTCTAAGTACGATGACCGAACAATTTAGG
upper sequence: Vv05s0020g04630.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G43745.1 (Arabidopsis thaliana), 3'ss of exon 6
---------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctaaagtaatagtgaattgtttac-----tgttttgattgaaaatat-tatattgtgtggaa-ctgcagCAAAGAACACATATTGGACGTGTTATTGGCTTTGTTCTTGCTATATGGGGCATATTGTTTTACTCCCGCCTATTGAGTACAATGACAGAACAATTCAGA
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gtcttgatttgcttctttaccagtcaacgatattattccagatcaattgccacttacaggcctcatgatatttttatggagttcttgcaactaaatgcagatatgtttactgaaaactgcagCAAAAGACACGCATTGAAAGAGTCATTGGATTTGTCCTAGCCATTTGGGGAATATTGTTTTACTCTCGGCTATTAAGCACAATGACAGAACAATTTCGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatagtgaattgtttactgttttgattgaaaatattatattgtgtggaactgcagCAAAGAACACATATTGGACGTGTTATTGGCTTTGTTCTTGCTATATGGGGCATATTGTTTTACTCCCGCCTATTGAGTACAATGACAGAACAATTCAGA
ttttgat putative branch site (score: 4)
aattgtttactgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctaaagtaatagtgaattgtttactgttttgattgaaaatattatattgtgtggaactgcagCAAAGAACACATATTGGACGTGTTATTGGCTTTGTTCTTGCTATATGGGGCATATTGTTTTACTCCCGCCTATTGAGTACAATGACAGAACAATTCAGA
- - - - - - - - - - - - - - - - - - - - aaagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaata