Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaagtgggactagttaggcctttatgacaagttaatcctctcagccaatatctgactcactaatcctattcatatattttctttgataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAGAAAGTTCAAGGAATTGATTTGTCCGTCTATGGGTCATCAAAAGTGGTGG

Basic information

species Vitis vinifera
transcript Vv05s0020g04510.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77584261|gb|DV221202.1|DV221202
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110377009|gb|EC942071.1|EC942071
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|77587966|gb|DV223186.1|DV223186
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110697772|gb|EE075142.1|EE075142
EST:     ATAATCTGATCCAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAA                         GATGGGCTGAGAAT-ACATATTTCTGGATCAAGGGACAAAT
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAAT
EST: gi|71870290|gb|DT019345.1|DT019345
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|71868033|gb|DT017088.1|DT017088
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|51051655|gb|CO819165.1|CO819165
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|71882666|gb|DT031721.1|DT031721
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACATATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110362661|gb|EC926208.1|EC926208
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|51052636|gb|CO819660.1|CO819660
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110377403|gb|EC942464.1|EC942464
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110429041|gb|EC995528.1|EC995528
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|22014016|gb|BQ799050.1|BQ799050
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110728895|gb|EE104863.1|EE104863
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGTAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110414119|gb|EC979945.1|EC979945
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110412507|gb|EC978257.1|EC978257
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|37185173|gb|CF604526.1|CF604526
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110366045|gb|EC929684.1|EC929684
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|87585066|gb|DY473974.1|DY473974
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACAT-TT-CTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110379565|gb|EC944770.1|EC944770
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|77587013|gb|DV222647.1|DV222647
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|33409706|gb|CF215333.1|CF215333
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|30299290|gb|CB976084.1|CB976084
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|77588003|gb|DV223206.1|DV223206
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|34362822|gb|CF404407.1|CF404407
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCCAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|34363692|gb|CF405277.1|CF405277
EST:     TGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: TGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|77586407|gb|DV222325.1|DV222325
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110386087|gb|EC950660.1|EC950660
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|71865446|gb|DT014501.1|DT014501
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|30134735|gb|CB920073.1|CB920073
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|28968059|gb|CB347092.1|CB347092
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|27585159|gb|CB007854.1|CB007854
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|77582834|gb|DV220397.1|DV220397
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|34363353|gb|CF404938.1|CF404938
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110711140|gb|EE087341.1|EE087341
EST:     ATAATCTGATCAAGGAGAAGCTTGGGTGGGCCCCTACCATGAAATTGAAA                         GATGGGCTGACAATTA-ATATTTCTGGAATCA-GGAACAA-TTGAAAAAGA
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGA-TCAAGGAACAAATTGAGAAAGA
EST: gi|33407870|gb|CF213497.1|CF213497
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTTTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110375283|gb|EC940257.1|EC940257
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110694519|gb|EE071694.1|EE071694
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110361148|gb|EC924601.1|EC924601
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110701568|gb|EE079284.1|EE079284
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|37185836|gb|CF605189.1|CF605189
EST:     ATAATCTGATCATGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAGG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110702570|gb|EE081430.1|EE081430
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|71874303|gb|DT023358.1|DT023358
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110415657|gb|EC981582.1|EC981582
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110725568|gb|EE102217.1|EE102217
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|30251810|gb|CB969543.1|CB969543
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|30253463|gb|CB971014.1|CB971014
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110361734|gb|EC925229.1|EC925229
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|51051566|gb|CO819121.1|CO819121
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110687336|gb|EE064657.1|EE064657
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110418196|gb|EC984322.1|EC984322
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|87583994|gb|DY473325.1|DY473325
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGANATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110703002|gb|EE079467.1|EE079467
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110418307|gb|EC984449.1|EC984449
EST:     GCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: GCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|71867732|gb|DT016787.1|DT016787
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCA-GGAACAAATTGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAG
EST: gi|71877083|gb|DT026138.1|DT026138
EST:     GGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: GGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|83277527|gb|DV941535.1|DV941535
EST:     GGTTGGGCCCTTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: GGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110389225|gb|EC954045.1|EC954045
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|30252141|gb|CB968780.1|CB968780
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTTTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|71890126|gb|DT039181.1|DT039181
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|51050815|gb|CO818742.1|CO818742
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|87586940|gb|DY475007.1|DY475007
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATT-CATATTTCTGGATCA-GGAACAA-TTGAGAAA-AG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110359380|gb|EC920776.1|EC920776
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|30253386|gb|CB970937.1|CB970937
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110691623|gb|EE069933.1|EE069933
EST:     CCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: CCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110429380|gb|EC995871.1|EC995871
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110357542|gb|EC921162.1|EC921162
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110728804|gb|EE104695.1|EE104695
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110707089|gb|EE083186.1|EE083186
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|110700605|gb|EE077416.1|EE077416
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG
EST: gi|34362980|gb|CF404565.1|CF404565
EST:     ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCA-GAGATTGAAG                         GATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATT-AGAAAGAG
genomic: ATAATCTGATCAAGGAGAAGCTTGGTTGGGCCCCTACCATGAGATTGAAGgtacaagtgg ... ataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagccaatatctgactcactaatcctattcatatattttctttgataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAGAAAGTTCAAGGAATTGATTTGTCCGTCTATGGGTCATCAAAAGTGGTGG
                          tattcatatattttct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacaagtgggactagttaggcctttatgacaagttaatcctctcagccaatatctgactcactaatcctattcatatattttctttgataattacagGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACAAATTGAGAAAGAGAAAGTTCAAGGAATTGATTTGTCCGTCTATGGGTCATCAAAAGTGGTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG