Sequence
atgc intronic sequence ATGC exonic sequence...agttaaagcaaaaattgctctattaactcttctttttcttctggaattttttgcttataaatgcatgcaagttttctaattattcatggttcttgttcagTTTTCCTGTTGATGATAATTCAACCATGAAGTCAGTTGTGGAATACTTCCAAGAAATGTATGGCTTTACAATTCAACATGCACACCTTCCTTGCCTTCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G00510.1 (Glycine max), 3'ss of exon 6
-------------------------agttaaagcaaaaattgctctattaactcttctttttcttctgg---aattttttgcttataaatgcatgcaagttttctaattattcatg--gttcttgttcagTTTTCCTGTTGATGATAATTCAACCATGAAGTCAGTTGTGGAATACTTCCAAGAAATGTATGGCTTTACAATTCAACATGCACACCTTCCTTGCCTTCAA
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gtaagtaataattctgttttataatattttattttaatata--tatagtaactcttcttctacactaagttcaaagatattccaattattttcctctagttttcttgatgacaaggatgtatctctttagGTTTCCTGTTGATGAGAATTCAACTATGAAGTCAGTAGTTGAATACTTTCAAGAGATGTATGGTTTCACAATTAAATATACTCACCTTCCTTGCCTTCAA
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G28970.1 (Glycine max), 3'ss of exon 7
agttaaagcaaaaattgctctattaactcttctttttcttctggaattttttgc-----ttataaatgcatgcaagttttctaattattcatggttcttgttcagTTTTCCTGTTGATGATAATTCAACCATGAAGTCAGTTGTGGAATACTTCCAAGAAATGTATGGCTTTACAATTCAACATGCACACCTTCCTTGCCTTCAA
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---------gtaagttgtttctctttcaggtctcttcctactggcagtcttagaaggtatagtgattttccattagctcactaaataatgatg-tgtttctttagGTTTCCTGTTGATGAGAACTCAACTATGAAATCAGTAGTTGAATACTTCCAAGAGATGTATGGTTTCACTATTCAATATACTCACCTTCCTTGCCTTCAA
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G38770.1 (Glycine max), 3'ss of exon 7
agttaaagcaaaaattgctctattaactcttctttttcttctggaattttttgct-tataaatgcatgcaagttttctaattattcatggttcttgttcagTTTTCCTGTTGATGATAATTCAACCATGAAGTCAGTTGTGGAATACTTCCAAGAAATGTATGGCTTTACAATTCAACATGCACACCTTCCTTGCCTTCAA
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------gtgagttgtttctctttcaggtctcttcctactagcagtcttagaagcgatagtgttttccgttagctcactaaataatgatgtattttctttagGTTTCCTGTTGATGAGAACTCAACTATGAAATCAGTAGTTGAATACTTCCAAGAGATGTATGGTTTCACTATTCAATATACTCACCTTCCTTGCCTTCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttttgcttataaatgcatgcaagttttctaattattcatggttcttgttcagTTTTCCTGTTGATGATAATTCAACCATGAAGTCAGTTGTGGAATACTTCCAAGAAATGTATGGCTTTACAATTCAACATGCACACCTTCCTTGCCTTCAA
ttctaat putative branch site (score: 2)
ttcttgttc putative PPT
aagttttctaattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agttaaagcaaaaattgctctattaactcttctttttcttctggaattttttgcttataaatgcatgcaagttttctaattattcatggttcttgttcagTTTTCCTGTTGATGATAATTCAACCATGAAGTCAGTTGTGGAATACTTCCAAGAAATGTATGGCTTTACAATTCAACATGCACACCTTCCTTGCCTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - aaagcaa
- - - - - - - - - - - - - - - - - - -cttctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatgg