1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctgagttctacttcattatgttttgcagttgagagtggttatggcaatgtcctatttttacaacatactataatgtggcattttgatgttgtgcttgcagGGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGAAGCTTACTGAGGATGATCTGAAAGAAATTTGTGATGCTGTGCCTCTTGA
species | Vitis vinifera |
transcript | Vv05s0020g04130.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTG GGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGAEST: gi|30254580|gb|CB971325.1|CB971325
genomic: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTGgtaaattacg ... gtgcttgcagGGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGA
EST: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTG GGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGAEST: gi|33408926|gb|CF214553.1|CF214553
genomic: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTGgtaaattacg ... gtgcttgcagGGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGA
EST: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTG GGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGAEST: gi|110414170|gb|EC979996.1|EC979996
genomic: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTGgtaaattacg ... gtgcttgcagGGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGA
EST: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGATGTGGTTCCGATCCCTG GGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGAEST: gi|32458980|gb|CD800154.1|CD800154
genomic: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTGgtaaattacg ... gtgcttgcagGGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGA
EST: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGATGTGGTTCCGATCCCTG GGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGAEST: gi|30254582|gb|CB971327.1|CB971327
genomic: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTGgtaaattacg ... gtgcttgcagGGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGA
EST: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTG GGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGAEST: gi|46918219|gb|CN547548.1|CN547548
genomic: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTGgtaaattacg ... gtgcttgcagGGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGA
EST: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGATGTGGTTCCGATCCCTG GGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGAEST: gi|33406858|gb|CF212485.1|CF212485
genomic: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTGgtaaattacg ... gtgcttgcagGGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGA
EST: TGTTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTG GGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGAEST: gi|110373812|gb|EC938182.1|EC938182
genomic: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTGgtaaattacg ... gtgcttgcagGGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGA
EST: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTG GGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGAEST: gi|30254500|gb|CB971245.1|CB971245
genomic: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTGgtaaattacg ... gtgcttgcagGGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGA
EST: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTG GGACAACCAAAGANAAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGEST: gi|110374215|gb|EC938843.1|EC938843
genomic: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTGgtaaattacg ... gtgcttgcagGGACAACCAAAGTTAA-GAACCTTGACAATAACATTGGATCCTTGGGAGTG
EST: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGATGTGGTTCCGATCCCTG GGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGA
genomic: TGCTCTGGCATGGCTTTTCCATCAGGGAGATGACGTGGTTCCGATCCCTGgtaaattacg ... gtgcttgcagGGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGA
aatgtcctatttttacaacatactataatgtggcattttgatgttgtgcttgcagGGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGAAGCTTACTGAGGATGATCTGAAAGAAATTTGTGATGCTGTGCCTCTTGA
ttttgat putative branch site (score: 4)
tatttttacaacatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgagttctacttcattatgttttgcagttgagagtggttatggcaatgtcctatttttacaacatactataatgtggcattttgatgttgtgcttgcagGGACAACCAAAGTTAAGAACCTTGACAATAACATTGGATCCTTGGGAGTGAAGCTTACTGAGGATGATCTGAAAGAAATTTGTGATGCTGTGCCTCTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - -ctacttc
- - - - - - - - - - - -tgcagtt
- - - - - - - - - - - - - - - - - - - -tatggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcattt