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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactattcctgctttatttgttttgtcactaattctaattcctactatgttcttgtcaacactaacaaccatttcttctggaaaaaaaaaaaaacatagGCAATTAAGAACGACAAGCTGTTCATATTAGATTATCATGATGCATTGATGCCATTCCTGAGCCGGATAAACTCAACTAGCACAAAGACATATGCCACAA

Basic information

species Vitis vinifera
transcript Vv05s0020g03170.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161713028|gb|FC062450.1|FC062450
EST:     AGAGCATATCGAGAAAAACATGAATGGTCTCACTGTCGATCAA                         GCAATTAAGAACGACAAGCTGTTCATATTAGATTATCATGATGCATTGATG
genomic: AGAGCATATCGAGAAAAACATGAATGGTCTCACTGTCGATCAAgtactattcc ... aaaaacatagGCAATTAAGAACGACAAGCTGTTCATATTAGATTATCATGATGCATTGATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgttcttgtcaacactaacaaccatttcttctggaaaaaaaaaaaaacatagGCAATTAAGAACGACAAGCTGTTCATATTAGATTATCATGATGCATTGATGCCATTCCTGAGCCGGATAAACTCAACTAGCACAAAGACATATGCCACAA
               cactaac  putative branch site (score: 1)
                                     aaaaaaaaaaaaacat  TA-rich tract