Sequence
atgc intronic sequence ATGC exonic sequencegtaaggcattattttctgttgtattctaaatctaagtaattttattcttcaaggtcattttttgtcagcatattcataattgaggttttattctgccgcagGCTACTATGACTGGTGCCAAGTCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g02910.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G39670.1 (Glycine max), 3'ss of exon 6
gtaaggcattattttctgttgtattctaaatctaagtaattttattcttcaaggtcattttttgtcagcatattcataattgaggttttattctgccgcagGCTACTATGACTGGTGCCAAGTCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTT
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gtatgattgatgttattagttcattatgatctta--caagctttttgtgtaac-ttgttttgggccatgacatctg-aatt----ctgtggattgatatagGCTACCATCAACGGTGCAAAGTCAATGAAGGGTACACCACATTGGATGTCTCCTGAAGTTATTTTACAGACAGGACATACAAT
upper sequence: Vv05s0020g02910.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G28090.1 (Glycine max), 3'ss of exon 6
gtaaggcattattttctgttgtattctaaatctaagtaattttattcttcaaggtcattttttgtcagcatattcataattgaggttttattctgccgcagGCTACTATGACTGGTGCCAAGTCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTT
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-------------gtatgattgatgtta---ttagttcattatgatcttacaagct-ttttgtgt-aacttgttttgggccatggatttat------atagGCTACCATCAACGGTGCAAAGTCAATGAAGGGCACACCACATTGGATGTCTCCTGAAGTTATTTTACAGACAGGACATACAAT
upper sequence: Vv05s0020g02910.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G06030.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaaggcattattttctgttgtattctaaatctaagtaattttattcttcaaggtcattttttgtcagcatattcataattgaggttttattctgccgcagGCTACTATGACTGGTGCCAAGTCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTT
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gtatg--attgcgcttctctttctctttaatc---atatttcaatatgttg----cctctctcttcagtactctaaaactttgtgaactttatgcttctagGCTACTGTAAATGGTGCCAAATCTATGAAGGGGACGCCTTATTGGATGGCTCCTGAAGTCATTCTCCAGACTGGTCATAGCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttcaaggtcattttttgtcagcatattcataattgaggttttattctgccgcagGCTACTATGACTGGTGCCAAGTCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTT
ttttattct CT-rich tract
atattcataattga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaggcattattttctgttgtattctaaatctaagtaattttattcttcaaggtcattttttgtcagcatattcataattgaggttttattctgccgcagGCTACTATGACTGGTGCCAAGTCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG