1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttgttcgtgtgcgtgtgtatgagtacacacataattcccttggtatcatatacttatttgtaaatgaatattgtaatagatagattctattcttgttcagGATTGGTGGTGTAACTATCCTACGGAAAGGAAAATCTGATCTCATCAGTGATGGTGAAACAG
species | Vitis vinifera |
transcript | Vv05s0020g02800.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAAGTAGGTGATCAAGATGCTGCTGAGCAATTACTCTCTCTCGCCAAAGG GATTGGTGGTGTAACTATCCTACGGAAAGGAAAATCTGATCTCATCAGTGAEST: gi|110392805|gb|EC957246.1|EC957246
genomic: GAAGTAGGTGATCAAGATGCTGCTGAGCAATTACTCTCTCTCGCCAAAGGgtaaaaattc ... tcttgttcagGATTGGTGGTGTAACTATCCTACGGAAAGGAAAATCTGATCTCATCAGTGA
EST: GAAGTAGGTGATCAAGATGCTGCTGAGCAATTACTCTCTCTCGCCAAAGG GATTGGTGGTGTAACTATCCTACGGAAAGGAAAATCTGATCTCATCAGTGA
genomic: GAAGTAGGTGATCAAGATGCTGCTGAGCAATTACTCTCTCTCGCCAAAGGgtaaaaattc ... tcttgttcagGATTGGTGGTGTAACTATCCTACGGAAAGGAAAATCTGATCTCATCAGTGA
tcatatacttatttgtaaatgaatattgtaatagatagattctattcttgttcagGATTGGTGGTGTAACTATCCTACGGAAAGGAAAATCTGATCTCATCAGTGATGGTGAAACAG
ttctattcttgttc CT-rich tract
ttatttgtaaatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttcgtgtgcgtgtgtatgagtacacacataattcccttggtatcatatacttatttgtaaatgaatattgtaatagatagattctattcttgttcagGATTGGTGGTGTAACTATCCTACGGAAAGGAAAATCTGATCTCATCAGTGATGGTGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - gtgtatg
- - - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - - - -tcccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaa