1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgaattgaattcccaggctatgcatgcatatcctccaagagttgtttaaatgatccaattttgatggtatgttgatgtgcccactctgttaccgttgcagCCAATAACACTTGCTCTAGTATACATTGGAACCACTCTCAAGGATCTTTCTGATGTGACACATGGATGGCATGAGTTTTCAACTTCTCGTTGG
species | Vitis vinifera |
transcript | Vv05s0020g02660.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCCAGTTCCAGTATGGGAGTACATGCTGGCTTCCTGGTTGGGAATGATG CCAATAACACTTGCTCTAGTATACATTGGGACCACTCTCANGGATCTTTCTEST: gi|110708978|gb|EE084046.1|EE084046
genomic: CTCCAGTTCCAGTATGGGAGTACATGCTGGCTTCCTGGTTGGGAATGATGgtatcttctc ... accgttgcagCCAATAACACTTGCTCTAGTATACATTGGAACCACTCTCAAGGATCTTTCT
EST: TCCAGTTCCAGTATGGGAGTACATGCTGGGCTTCCTGGTTGGGAATGATG GCAATAACACTTGCTCTAGTATACATTGGAACCCCTCTCAAGGATCTTEST: gi|110416216|gb|EC982180.1|EC982180
genomic: TCCAGTTCCAGTATGGGAGTACATGCTGG-CTTCCTGGTTGGGAATGATGgtatcttctc ... accgttgcagCCAATAACACTTGCTCTAGTATACATTGGAACCACTCTCAAGGATCTT
EST: CTCCAGTTCCAGTATGGGAGTACATGCTGGCTTCCTGGTTGGGAATGATG CCAATAACACTTGCTCTAGTATACATTGGAACCACTCTCAAGGATCTTTCTEST: gi|110391593|gb|EC956579.1|EC956579
genomic: CTCCAGTTCCAGTATGGGAGTACATGCTGGCTTCCTGGTTGGGAATGATGgtatcttctc ... accgttgcagCCAATAACACTTGCTCTAGTATACATTGGAACCACTCTCAAGGATCTTTCT
EST: CTCCAGTTCCAGTATGGGAGTACATGCTGGCTTCCTGGTTGGGAATGATG CCAATAACACTTGCTCTAGTATACATTGGAACCACTCTCAAGGATCTTTCTEST: gi|34546576|gb|CF514808.1|CF514808
genomic: CTCCAGTTCCAGTATGGGAGTACATGCTGGCTTCCTGGTTGGGAATGATGgtatcttctc ... accgttgcagCCAATAACACTTGCTCTAGTATACATTGGAACCACTCTCAAGGATCTTTCT
EST: CTCCAGTTCCAGTATGGGAGTACATGCTGGCTTCCTGGTTGGGAATGATG CCAATAACACTTGCTCTAGTATACATTGGAACCACTCTCAAGGATCTTTCT
genomic: CTCCAGTTCCAGTATGGGAGTACATGCTGGCTTCCTGGTTGGGAATGATGgtatcttctc ... accgttgcagCCAATAACACTTGCTCTAGTATACATTGGAACCACTCTCAAGGATCTTTCT
ttaaatgatccaattttgatggtatgttgatgtgcccactctgttaccgttgcagCCAATAACACTTGCTCTAGTATACATTGGAACCACTCTCAAGGATCTTTCTGATGTGACACATGGATGGCATGAGTTTTCAACTTCTCGTTGG
tgttgat putative branch site (score: 4)
aattttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaattgaattcccaggctatgcatgcatatcctccaagagttgtttaaatgatccaattttgatggtatgttgatgtgcccactctgttaccgttgcagCCAATAACACTTGCTCTAGTATACATTGGAACCACTCTCAAGGATCTTTCTGATGTGACACATGGATGGCATGAGTTTTCAACTTCTCGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- aattgaa
- - - - - -cccaggc
- - - - - - - - - - -gcatgca
- - - - - - - - - - - - - - - tcctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtg