Sequence
atgc intronic sequence ATGC exonic sequencegttacactgcttttacagttactaatctatctcgtcatggaaacaatgatttatgtttatccagagtgaattcttcatctgatgtgtttggattgcagCCAAGGCACCTCTTCTAGCTTATAACAGTTTTGTTGAAGCCATTTTTGTTCTGAATGACTGCCATGTCCATAATGGAGGTAATGATTCTCAGAGTACGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01160.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA15G15920.1 (Glycine max), 3'ss of exon 6
gttacactgcttttacagttactaatctatctcgtcatggaaacaatg--atttatgtttatccagagtgaattcttcatctgatgtgtttggattgc-agCCAAGGCACCTCTTCTAGCTTATAACAGTTTTGTTGAAGCCATTTTTGTTCTGAATGACTGCCATGTCCATAATGGAGGTAATGATTCTCAGAGTACGCA
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gtttgaatctttatcttgatagttatacttgccattatatataaattggaaaatatgtttgtc---attgga--ctttaattattgtgtttttctcaccagTCAAGTCTCCTCTTTTAGCATACAATAGTTTTGTTGAGGCTGTTTTTGTTCTGAACGACTGTCATGTCCATAATGGGCATCGTGAGTCTCAAGGATCACG
upper sequence: Vv05s0020g01160.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G04940.1 (Glycine max), 3'ss of exon 7
----gttacactgcttttacagttactaatctatctcgtcatggaaacaatgatttatgtttatccagagtgaattcttcatctgatgtgtttggattgc-agCCAAGGCACCTCTTCTAGCTTATAACAGTTTTGTTGAAGCCATTTTTGTTCTGAATGACTGCCATGTCCATAATGGAGGTAATGATTCTCAGAGTACGCA
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gtctgaaactttatcttgatagttat--acttgccattatatataaattaaaaaatatgtttgtc---attggatttt--aactattgtgttttcctcaccagTCAAGTCTCCTCTTTTAGCATACAATAGTTTTGTTGAGGCTGTTTTTGTTCTGAACGACTGTCATGTCCATAATGGGCATCGTGAGTCTCAAGGATCACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caatgatttatgtttatccagagtgaattcttcatctgatgtgtttggattgcagCCAAGGCACCTCTTCTAGCTTATAACAGTTTTGTTGAAGCCATTTTTGTTCTGAATGACTGCCATGTCCATAATGGAGGTAATGATTCTCAGAGTACGCA
atctgat putative branch site (score: 4)
atttatgtttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttacactgcttttacagttactaatctatctcgtcatggaaacaatgatttatgtttatccagagtgaattcttcatctgatgtgtttggattgcagCCAAGGCACCTCTTCTAGCTTATAACAGTTTTGTTGAAGCCATTTTTGTTCTGAATGACTGCCATGTCCATAATGGAGGTAATGATTCTCAGAGTACGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG