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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttgaacatcaagtgcagaaaacctatgaaacataaggaagtttttacattagtttttgccttctcaattatgtgcagATTGAGACATGTAGAAAGGTTGAAAATGTATTAAAGCATTTTGATAGAAAAGGAGTTCGTTTGCGAGTTTTAGCATTCCACGCTGCATTGACTCAGGAGT

Basic information

species Vitis vinifera
transcript Vv05s0020g01130.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01130.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G00480.1 (Glycine max), 3'ss of exon 3
--------------------gtaagcttgaacatca-agtgcagaaaacctatgaaacataaggaagtttttacattagtttttgccttctcaattatg---tgcagATTGAGACATGTAGAAAGGTTGAAAATGTATTAAAGCATTTTGATAGAAAAGGAGTTCGTTTGCGAGTTTTAGCATTCCACGCTGCATTGACTCAGGAGT
                      |  |||     | | | |    |    ||||| | |||  |     |||||  || || |    || |  ||  |     |||||||||| || || ||||| ||||||||| ||||||||| ||||||||||||||||  | |  ||| |||| || ||||||| |||||  |||| || || |
gtattccacattcttacctttgagacttattttttatattttcaattttctatgcagcatttgtc--cttttattttggtgtaattctccaaaaaaaaaaattgcagATTGAAACCTGCAGAAAAGTTGAAAATTTATTAAAGCGTTTTGATAGAAAAGGAAATTGCGTGCAAGTTCTACCATTCCATGCTGCCATGACACAAGAAT

upper sequence: Vv05s0020g01130.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G00390.1 (Glycine max), 3'ss of exon 3
--------------------gtaagcttgaacatca-agtgcagaaaacctatgaaacataaggaagtttttacattagtttttgccttctcaattatgt-gcagATTGAGACATGTAGAAAGGTTGAAAATGTATTAAAGCATTTTGATAGAAAAGGAGTTCGTTTGCGAGTTTTAGCATTCCACGCTGCATTGACTCAGGAGT
                      |  |||     | | | |    |    ||||| |||||  |     |||||  || || |    || |  ||  |  | ||||||||| ||||| ||||| ||||||||| | ||||||| ||||||||||||||||  ||   ||| |||| || ||||||| |||||  |||| || || |
gtattcctcattcttacccttgagacttatcttttataattttaattttctatgcaacatttgtc--cttttattttggtataattctccaaaaaaaaattgcagATTGAAACATGCAGAAAAGTTGAAAATTTGTTAAAGCGTTTTGATAGAAAAGGAAATCACGTGCAAGTTCTACCATTCCATGCTGCCATGACACAAGAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110363414|gb|EC926997.1|EC926997
EST:     AGCTTGTGGAGGGAAGTCCAGTTTCCAGAACAATTGTTTTCTGTAACAAG                         ATTGAGACATGTAGAAAGGTTGAAAATGTATTAAAGCATTTTGATAGAAAA
genomic: AGCTTGTGGAGGGAAGTCCAGTTTCCAGAACAATTGTTTTCTGTAACAAGgtaagcttga ... ttatgtgcagATTGAGACATGTAGAAAGGTTGAAAATGTATTAAAGCATTTTGATAGAAAA
EST: gi|22007988|gb|BQ793022.1|BQ793022
EST:     AGCTTGTGGAGGGAAGTCCAGTTTCCAGAACAATTGTTTTCTGTAACAAG                         ATTGAGACATGTAGAAAGGTTGAAAATGTATTAAAGCATTTTGATAGAAAA
genomic: AGCTTGTGGAGGGAAGTCCAGTTTCCAGAACAATTGTTTTCTGTAACAAGgtaagcttga ... ttatgtgcagATTGAGACATGTAGAAAGGTTGAAAATGTATTAAAGCATTTTGATAGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgaaacataaggaagtttttacattagtttttgccttctcaattatgtgcagATTGAGACATGTAGAAAGGTTGAAAATGTATTAAAGCATTTTGATAGAAAAGGAGTTCGTTTGCGAGTTTTAGCATTCCACGCTGCATTGACTCAGGAGT
                  tttttacattagtttt  TA-rich tract