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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgcctaactcaacactgtgtgtctgcatattttttatcttgataaaagagatcactctcttaagatgaaagtatattaatagcctgcacttgaaactcgcagGACATGCTGAATGTGCCAGTCCTATATATAATTGGAGCTTTTATTCCAGCAACTATGATTGCTGTACTTTACTATTTTGACCACAGTGTAGCATCTCAAC

Basic information

species Vitis vinifera
transcript Vv05s0020g00440.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00440.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA15G14520.1 (Glycine max), 3'ss of exon 11
-----gcatgcctaactcaacactgtgtgtctgcatattttttatcttgataaaagaga-------------tcactctcttaagatgaaagtatattaatag----cctg------cacttgaaactc---gcagGACATGCTGAATGTGCCAGTCCTATATATAATTGGAGCTTTTATTCCAGCAACTATGATTGCTGTACTTTACTATTTTGACCACAGTGTAGCATCTCAAC
       | || | | |    | | |||  ||   |||||| |||   || | | ||               | | | ||||| | |   |||   |  || |      ||       | |  ||| |     ||||||||||||||||||||||| || ||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||| |
gtcataaaggcatgagttgttaatatgt-cctaattattttatattaggaaatatgatgattaaatttctctttaatttcttatgttctcagttcttccatggaaattttgatgacatattcaaaattatcaacagGACATGCTGAATGTGCCAGTTCTCTATATTATTGGAGCCTTTATTCCAGCAACAATGATTGCTGTGCTTTATTATTTTGACCATAGTGTGGCATCTCAGC

upper sequence: Vv05s0020g00440.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G03600.1 (Glycine max), 3'ss of exon 9
-------------------------------gcatgcctaactcaacactgtgtgtctgcatattttttatcttgataaaagagatcactctcttaagatgaaagtatattaatagcctgcacttgaa-actcgcagGACATGCTGAATGTGCCAGTCCTATATATAATTGGAGCTTTTATTCCAGCAACTATGATTGCTGTACTTTACTATTTTGACCACAGTGTAGCATCTCAAC
                                  |   |  | | |     | ||       | ||| | | |   |  |     ||    |  |   ||| || | | | |||    |   |   |  ||   ||||||||||||||||||||||| || ||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||| |
gtcataaaggcatgattagtttataagtcctaattattttgcgctaggaaatatgatgatgaaatttctctttcattttatatattctaatttcttccatggaaattt-taaatgaaatattcaaaatcaccaacagGACATGCTGAATGTGCCAGTTCTCTATATTATTGGAGCCTTTATTCCAGCAACAATGATTGCTGTGCTTTATTATTTTGACCATAGTGTGGCATCTCAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagatcactctcttaagatgaaagtatattaatagcctgcacttgaaactcgcagGACATGCTGAATGTGCCAGTCCTATATATAATTGGAGCTTTTATTCCAGCAACTATGATTGCTGTACTTTACTATTTTGACCACAGTGTAGCATCTCAAC
                          tattaat  putative branch site (score: 2)
            ttaagatgaaagtata  TA-rich tract