1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatggtcatgaatcatgatccattgcttcatgctttacatatagtatctactcttcaaattcaaacgatgtgcaatttaaattctttttgcagGATATACAATTCCAGCAGGGTGGATAATTTTAGTTGTCCCTTCAGCACTTCACATGGACCCTGAAACATACCCCGATCCTCTTGTTTTCAACCCATGGCG
species | Vitis vinifera |
transcript | Vv04s0210g00160.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATTAGTCTTGGGAGTTTTAGAAGAGCCGTGGAAGATGTAAGGATAAATG GATATACAATTCCAGCAGGGTGGATAATTTTAGTTGTCCCTTCAGCACTTCEST: gi|30299516|gb|CB976310.1|CB976310
genomic: TATTAGTCTTGGGAGTTTTAGAAGAGCCGTGGAAGATGTAAGGATAAATGgtatggtcat ... ctttttgcagGATATACAATTCCAGCAGGGTGGATAATTTTAGTTGTCCCTTCAGCACTTC
EST: TATTAGTCTTGGGAGTTTTAGAAGAGCCGTGGAAGATGTAAGGATAAATG GATATACAATTCCAGCAGGGTGGATAATTTTAGTTGTCCCTTCAGCACTTCEST: gi|30298993|gb|CB975787.1|CB975787
genomic: TATTAGTCTTGGGAGTTTTAGAAGAGCCGTGGAAGATGTAAGGATAAATGgtatggtcat ... ctttttgcagGATATACAATTCCAGCAGGGTGGATAATTTTAGTTGTCCCTTCAGCACTTC
EST: TATTAGTCTTGGGAGTTTTAGAAGAGCCGTGGAAGATGTAAGGATAAATG GATATACAATTCCAGCAGGGTGGATAATTTTAGTTGTCCCTTCAGCACTTC
genomic: TATTAGTCTTGGGAGTTTTAGAAGAGCCGTGGAAGATGTAAGGATAAATGgtatggtcat ... ctttttgcagGATATACAATTCCAGCAGGGTGGATAATTTTAGTTGTCCCTTCAGCACTTC
atatagtatctactcttcaaattcaaacgatgtgcaatttaaattctttttgcagGATATACAATTCCAGCAGGGTGGATAATTTTAGTTGTCCCTTCAGCACTTCACATGGACCCTGAAACATACCCCGATCCTCTTGTTTTCAACCCATGGCG
ttctttttgc CT-rich tract
aatttaaattcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtcatgaatcatgatccattgcttcatgctttacatatagtatctactcttcaaattcaaacgatgtgcaatttaaattctttttgcagGATATACAATTCCAGCAGGGTGGATAATTTTAGTTGTCCCTTCAGCACTTCACATGGACCCTGAAACATACCCCGATCCTCTTGTTTTCAACCCATGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA