1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcaaaaatggaatcctttcacttcacctggtagagcaaatgtggagtaaaatgtaaattatcttgacatcagcttacattggaacttgccccaaatgcagGTTCCCTTTTTCTCACAGATGGATGATCAGCTACTTGATGCAATATGTGAGCGCCTAGTATCATCCTTGAGTACTCAAGGTACCTACATAGTTCGCGAGG
species | Vitis vinifera |
transcript | Vv04s0069g00790.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTTACGTCGAGATATCCAGCGCCATCTATGCTTGGACCTTGTTCGACGT GTTCCCTTTTTCTCACAGATGGATGATCAGCTACTTGATGCAATATGTGAGEST: gi|161717176|gb|FC068486.1|FC068486
genomic: ATTTACGTCGAGATATCCAGCGCCATCTATGCTTGGACCTTGTTCGACGTgtaagttccc ... ccaaatgcagGTTCCCTTTTTCTCACAGATGGATGATCAGCTACTTGATGCAATATGTGAG
EST: ATTTACGTCGAGATATCCAGCGCCATCTATGCTTGGACCTTGTTCGACGT GTTCCCTTTTTCTCACAGATGGATGATCAGCTACTTGATGCAATATGTGAG
genomic: ATTTACGTCGAGATATCCAGCGCCATCTATGCTTGGACCTTGTTCGACGTgtaagttccc ... ccaaatgcagGTTCCCTTTTTCTCACAGATGGATGATCAGCTACTTGATGCAATATGTGAG
gtaaaatgtaaattatcttgacatcagcttacattggaacttgccccaaatgcagGTTCCCTTTTTCTCACAGATGGATGATCAGCTACTTGATGCAATATGTGAGCGCCTAGTATCATCCTTGAGTACTCAAGGTACCTACATAGTTCGCGAGG
agcttac putative branch site (score: 3)
cttgcccc putative PPT
atgtaaattatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaaaatggaatcctttcacttcacctggtagagcaaatgtggagtaaaatgtaaattatcttgacatcagcttacattggaacttgccccaaatgcagGTTCCCTTTTTCTCACAGATGGATGATCAGCTACTTGATGCAATATGTGAGCGCCTAGTATCATCCTTGAGTACTCAAGGTACCTACATAGTTCGCGAGG
-caaaaat
- - - - - - -cctttca
- - - - - - - - - - cttcacc
- - - - - - - - - - - - - - - - - gcaaatg
- - - - - - - - - - - - - - - - - - - - - - agtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acttgcc