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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgctatttccctagtaatgtctgtagatttagacattaatcttaggctcttaaaacacttcttggttattgaatagGGTGAAAGTCTGAGTCTGTTTGAAATGAATGCCTCCACAAGCATCATCTCTGCTTCCGAAGCCTATGCAGGATACTTCACTCCCTATCAATCCAG

Basic information

species Vitis vinifera
transcript Vv04s0044g01970.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01970.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G32760.1 (Glycine max), 3'ss of exon 6
gtaatgctatttccctagtaatgtctgtagatttagacattaatcttaggctcttaaaacacttcttggttattgaa-tagGGTGAAAGTCTGAGTCTGTTTGAAATGAATGCCTCCACAAGCATCATCTCTGCTTCCGAAGCCTATGCAGGATACTTCACTCCCTATCAATCCAG----------
                                         | | | |||  | | |   | || |   | ||||||  ||||||||||||| ||||| ||||||||||||||||||||||| || || |||||||| | |||| ||| ||||||||||||||| |||||||||||          
-----------------------------------------actatgaggaccctgat-tagttttccatgattgaaacagggtgaaagtctcagtctctttgaaatgaatgcctccacaaggataatttctgcttctgcagCCAATGGAGGATACTTCACTCCTTATCAATCCAGGTGAAGCAAG

upper sequence: Vv04s0044g01970.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G22010.1 (Glycine max), 3'ss of exon 5
--------------gtaatgctatt-tccctagtaatgtctgtaga-----tttagacattaatcttaggctcttaaaacacttcttggttattgaatagGGTGAAAGTCTGAGTCTGTTTGAAATGAATGCCTCCACAAGCATCATCTCTGCTTCCGAAGCCTATGCAGGATACTTCACTCCCTATCAATCCAG
              || ||  | || |   ||  ||  | | ||       |||  |   |    || || || | |     |||       |  || ||||||||||||| || || ||||||||||||||||||||||| || || |||||||| | |||| ||| ||||||||| ||||| |||||||||||
aattttaaaaggaagtcatatttttgtgaataaaaaaatatttaagcctttttttaaaggtggcatttggatcctgagtagtttcccatgattgaaacagGGTGAAAGTCTCAGCCTTTTTGAAATGAATGCCTCCACAAGGATAATTTCTGCTTCTGCAGCCAATGGAGGATACTTTACTCCTTATCAATCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagatttagacattaatcttaggctcttaaaacacttcttggttattgaatagGGTGAAAGTCTGAGTCTGTTTGAAATGAATGCCTCCACAAGCATCATCTCTGCTTCCGAAGCCTATGCAGGATACTTCACTCCCTATCAATCCAG
            cattaat  putative branch site (score: 3)
     atttagacattaat  TA-rich tract