1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acctggattgaactgaatcaagtcctgttattgatgcttattatgcattttgctcccaaaaaggttaaataaatcgtttcttttcattattgtactacagTCTCGCGTCTATAAGTGGTGGAAACCTGGTGGGAACTTGTACCTGCAATTTTCTAGAGCTATCAAGTTTACCCCCATTTTCTTTTGGGGAATATTTGG
species | Vitis vinifera |
transcript | Vv04s0044g01940.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAGCCATGGAGATGGGACGGCCCTTGGTTCCAGTTTTCTGCTTTGGTCAG TCTCGCGTCTATAAGTGGTGGAAACCTGGTGGGAACTTGTACCTGCAATTTEST: gi|110718650|gb|EE095723.1|EE095723
genomic: TAGCCATGGAGATGGGACGGCCCTTGGTTCCAGTTTTCTGCTTTGGTCAGgtatttgttt ... tgtactacagTCTCGCGTCTATAAGTGGTGGAAACCTGGTGGGAACTTGTACCTGCAATTT
EST: ACCCATGGAGATGGGAAGGCCCTTTGGTTCCA-TTTTCTGCTTTGGTCAG TCTCCCGTCCTATAA-TGGTGGAAACCTGGEST: gi|110405821|gb|EC971375.1|EC971375
genomic: AGCCATGGAGATGGGACGGCCCTT-GGTTCCAGTTTTCTGCTTTGGTCAGgtatttgttt ... tgtactacagTCTCGCGTC-TATAAGTGGTGGAAACCTGG
EST: TAGCCATGGAGATGGGACGGCCCTTAGTTCCAGTTTTCTGCTTTGGTCAG TCTCACGTCTATAAGTGGTGGAAACCTGGTGGGAACTTGTACCTGCAATTTEST: gi|110715904|gb|EE094489.1|EE094489
genomic: TAGCCATGGAGATGGGACGGCCCTTGGTTCCAGTTTTCTGCTTTGGTCAGgtatttgttt ... tgtactacagTCTCGCGTCTATAAGTGGTGGAAACCTGGTGGGAACTTGTACCTGCAATTT
EST: TAGCCATGGAGATGGGACGGCCCTTGGTTCCAGTTTTCTGCTTTGGTCAG TCTCACGTCTATAAGTGGTGGAAACCTGGTGGGAACTTGTACCTGCAATTTEST: gi|30131047|gb|CB916386.1|CB916386
genomic: TAGCCATGGAGATGGGACGGCCCTTGGTTCCAGTTTTCTGCTTTGGTCAGgtatttgttt ... tgtactacagTCTCGCGTCTATAAGTGGTGGAAACCTGGTGGGAACTTGTACCTGCAATTT
EST: TAGCCATGGAGATGGGACGGCCCTTGGTTCCAGTTTTCTGCTTTGGTCAG TCTCGCGTCTATAAGTGGTGGAAACCTGGTGGGAACTTGTACCTGCAATTTEST: gi|156739053|gb|EV243166.1|EV243166
genomic: TAGCCATGGAGATGGGACGGCCCTTGGTTCCAGTTTTCTGCTTTGGTCAGgtatttgttt ... tgtactacagTCTCGCGTCTATAAGTGGTGGAAACCTGGTGGGAACTTGTACCTGCAATTT
EST: TAGCCATGGAGATGGGACGGCCCTTGGTTCCAGTTTTCTGCTTTGGTCAG TCTCGCGTCTATAAGTGGTGGAAACCTGGTGGGAACTTGTACCTGCAATTT
genomic: TAGCCATGGAGATGGGACGGCCCTTGGTTCCAGTTTTCTGCTTTGGTCAGgtatttgttt ... tgtactacagTCTCGCGTCTATAAGTGGTGGAAACCTGGTGGGAACTTGTACCTGCAATTT
cattttgctcccaaaaaggttaaataaatcgtttcttttcattattgtactacagTCTCGCGTCTATAAGTGGTGGAAACCTGGTGGGAACTTGTACCTGCAATTTTCTAGAGCTATCAAGTTTACCCCCATTTTCTTTTGGGGAATATTTGG
tttcttttcattatt CT-rich tract
ttaaataaatcgtttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctggattgaactgaatcaagtcctgttattgatgcttattatgcattttgctcccaaaaaggttaaataaatcgtttcttttcattattgtactacagTCTCGCGTCTATAAGTGGTGGAAACCTGGTGGGAACTTGTACCTGCAATTTTCTAGAGCTATCAAGTTTACCCCCATTTTCTTTTGGGGAATATTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
acctgga
- - - - - - - gaatcaa
- - - - - - - - - - - -cctgtta
- - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - -tatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - ctcccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa