1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atgtatccattgttatatgcaccagatatcattattcatgaacatatatgctaaccacttcatgtatgctgaccacttcatgtgtgctggtggtattcagGCTTCAGGATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGGGTTGGCACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGA
species | Vitis vinifera |
transcript | Vv04s0044g01840.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAG GC-TCAGGATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGEST: gi|351041413|gb|FQ447540.1|FQ447540
genomic: TCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAGgtcaaaatca ... tggtattcagGCTTCAGGATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAG
EST: TCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAG GCTTCAGGATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGEST: gi|32247711|gb|CD713530.1|CD713530
genomic: TCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAGgtcaaaatca ... tggtattcagGCTTCAGGATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAG
EST: TCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAG GCTTCAGGATCAGGCAGAGCACGAAGGGATGCTGCAGCTEST: gi|352794399|gb|FQ481630.1|FQ481630
genomic: TCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAGgtcaaaatca ... tggtattcagGCTTCAGGATCAGGCAGAGCACGAAGGGATGCTGCAGCT
EST: TCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAG GCTTCAGGATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGEST: gi|110688872|gb|EE067920.1|EE067920
genomic: TCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAGgtcaaaatca ... tggtattcagGCTTCAGGATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAG
EST: TCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAG GCTTCAGGATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGEST: gi|71880737|gb|DT029792.1|DT029792
genomic: TCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAGgtcaaaatca ... tggtattcagGCTTCAGGATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAG
EST: TCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAG GCTTCAGGATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAG
genomic: TCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAGgtcaaaatca ... tggtattcagGCTTCAGGATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtatccattgttatatgcaccagatatcattattcatgaacatatatgctaaccacttcatgtatgctgaccacttcatgtgtgctggtggtattcagGCTTCAGGATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGGGTTGGCACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGA
- gtatcca
- - - - - - - - -tgcacca
- - - - - - - - - - - - - - - - - - catgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtgt