1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...catggaagagctaacacattggcaagtgaaggaaagtattttgttttgttttgcttttcagttaattattgaagcctgatttcaatttttactgaaccagATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAG
species | Vitis vinifera |
transcript | Vv04s0044g01290.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGGACCTAATGGGGAGATCAAGTTGGCTGATTTTGGCATGGCAAAACAT ATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGEST: gi|161719911|gb|FC068682.1|FC068682
genomic: TGGGACCTAATGGGGAGATCAAGTTGGCTGATTTTGGCATGGCAAAACATgtatatctca ... actgaaccagATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATG
EST: TGGGACCTAATGGGGAGATCAAGTTGGCTGATTTTGGCATGGCAAAACAT ATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGEST: gi|71863025|gb|DT012080.1|DT012080
genomic: TGGGACCTAATGGGGAGATCAAGTTGGCTGATTTTGGCATGGCAAAACATgtatatctca ... actgaaccagATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATG
EST: TGGGACCTAATGGGGAGATCAAGTTGGCTGATTTTGGCATGGCAAAACAT ATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGAT
genomic: TGGGACCTAATGGGGAGATCAAGTTGGCTGATTTTGGCATGGCAAAACATgtatatctca ... actgaaccagATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGAT
ttgttttgcttttcagttaattattgaagcctgatttcaatttttactgaaccagATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAG
gcctgat putative branch site (score: 4)
tttttact putative PPT
ttttcagttaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catggaagagctaacacattggcaagtgaaggaaagtattttgttttgttttgcttttcagttaattattgaagcctgatttcaatttttactgaaccagATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAG
catggaa
- - - - - ctaacac
- - - - - - - - - - - - - - aaggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcctga