Sequence
atgc intronic sequence ATGC exonic sequencegtgggtgttttctgaaaatcttttgtgttttgttgtgtagtgttaaatgctgtatctaaaagattgattttatccctagcagGTTACAAATGGTGGTGTTCCCAAAGCCAGTGATGCTCTATCTGGTGAACTTTGGGAGGTAAAGAAAGAGAGGATTTGCAAAGCTTCAGTGTATGGAAAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G39150.1 (Glycine max), 3'ss of exon 7
gtgggtgttttctgaaaatcttttgtgttttgttgtgtagtgttaa-atgctgtatctaaaagat-tgattttatccctagcagGTTACAAATGGTGGTGTTCCCAAAGCCAGTGATGCTCTATCTGGTGAACTTTGGGAGGTAAAGAAAGAGAGGATTTGCAAAGCTTCAGTGTATGGAAAGT---
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gtaagacaatattgatgcaactaca-gttttgtttagccttagaaatatgaagtttatacatgacatgattcc--tccaaacagGCTA---ATGGAATTATCCCCAAAGCTAGTGATGCCTTGTCTGGTGAACTTTGGGAGGTGAAGAAAGAGAGGATACGTAAGGCTTCTATCCATGGGAATTTAC
upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G16620.1 (Glycine max), 3'ss of exon 8
gtggg---tgttttctgaaaatcttttgtgttttgttgtgtagtg--ttaaatgctgtatctaaaagattgattttatccctagcagGTTACAAATGGTGGTGTTCCCAAAGCCAGTGATGCTCTATCTGGTGAACTTTGGGAGGTAAAGAAAGAGAGGATTTGCAAAGCTTCAGTGTATGGAAAGT---
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gtaagccatacttattgaagtttacttttaattaacctcagggttgtttagttgtcatatataaca---tgattct---tccaacagGTTA---ATGGAATTACTCCCAAAGCCAGCGATGCCTTGTCTGGTGAACTTTGGGAGGCAAAGAAGGATAGGATATGCAAGGCTTCCATATATGGGAAGTTAC
upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G15820.1 (Glycine max), 3'ss of exon 7
--gtgggtgttttctgaaaatcttttgtgttttgttgtgtagtgttaaatgctgtatctaaaagattgattttatccctagcagGTTACAAATGGTGGTGTTCCCAAAGCCAGTGATGCTCTATCTGGTGAACTTTGGGAGGTAAAGAAAGAGAGGATTTGCAAAGCTTCAGTGTATGGAAAGT---
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gtaagacaatattgttgcaactagttttgtttagccttagaaatatgaagttgttatacatgacatga---ttactccaaacagGCTA---ATGGAATTATCCCCAAAGCTAGTGATGCCTTGTCTGGTGAACTTTTTGAGGTAAAGAAAGAGAGGATACGTAAGGCTTCTATCCATGGGAATTTAC
upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G32460.1 (Glycine max), 3'ss of exon 6
gtggg---tgttttctgaaaatcttttgtgttttgttgtgtagtg--ttaaatgctgtatctaaaagattgattttatccctagcagGTTACAAATGGTGGTGTTCCCAAAGCCAGTGATGCTCTATCTGGTGAACTTTGGGAGGTAAAGAAAGAGAGGATTTGCAAAGCTTCAGTGTATGGAAAGT---
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gtaagccataattattgaagtttacttttacttaacctcaggattgtttagttgtcatatataaca---tgattc---ctccaacagGTTA---ATGGACTTAATCCCAAAGCTAGCGATGCCTTGTCTGGTGAACTTTGGGAGGCAAAGAAGGATAGGATATGCAAGGCTTCCATATATGGAAAGTTAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttgttgtgtagtgttaaatgctgtatctaaaagattgattttatccctagcagGTTACAAATGGTGGTGTTCCCAAAGCCAGTGATGCTCTATCTGGTGAACTTTGGGAGGTAAAGAAAGAGAGGATTTGCAAAGCTTCAGTGTATGGAAAGT
ttttatccct CT-rich tract
tatctaaaagattgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgggtgttttctgaaaatcttttgtgttttgttgtgtagtgttaaatgctgtatctaaaagattgattttatccctagcagGTTACAAATGGTGGTGTTCCCAAAGCCAGTGATGCTCTATCTGGTGAACTTTGGGAGGTAAAGAAAGAGAGGATTTGCAAAGCTTCAGTGTATGGAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG