Sequence
atgc intronic sequence ATGC exonic sequence...tttttttcccaaattttacattttatctggcaaaagtaattcatcatgtggaatttgctagttgttgtgaactgatattggcatttatttgttgatctagTTAATGCAGAGGTTGTGCTGAAAGCTACAAATGTTGATGGGGTTTTCGATGATGACCCCAGGCGTAACCCAAATGCTCGTCTCCTTGATTCTCTTACTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0044g00890.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G139462_T04 (Zea mays), 3'ss of exon 4
--tttttttcccaaattttacattttatctggcaaaagtaattcatcatgtggaatttgcta-gttgttgtgaactgatattggcatttatttgttgatctagTTAATGCAGAGGTTGTGCTGAAAGCTACAAATGTTGATGG-GGTTTTCGATGATGACCCCAGGCGTAACCCAAATGCTCGTCTCCTTGATTCTCTTACTTA
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agactagtcctcggatgaacaaccctgtttcgttg--gtttttctttttgcttagtttattgtgccattgaccttttttatgcgctattattatgtgagc-agTCAATGCAGAGGTAGTGCTGAAAGCAACAAATGTTGATGGTGGTGTATGATGCGGACCCCAGGCAGAATCCAAATGCCCGCCTTCTGGAGACTGTGAGCT-
upper sequence: Vv04s0044g00890.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G139462_T06 (Zea mays), 3'ss of exon 5
--tttttttcccaaattttacattttatctggcaaaagtaattcatcatgtggaatttgcta-gttgttgtgaactgatattggcatttatttgttgatctagTTAATGCAGAGGTTGTGCTGAAAGCTACAAATGTTGATGGGGTTTTCGATGATGACCCCAGGCGTAACCCAAATGCTCGTCTCCTTGATTCTCTTACTTA
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agactagtcctcggatgaacaaccctgtttcgttg--gtttttctttttgcttagtttattgtgccattgaccttttttatgcgctattattatgtgagc-agTCAATGCAGAGGTAGTGCTGAAAGCAACAAATGTTGATGGT-----------------------------------------------------------
upper sequence: Vv04s0044g00890.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G18680.1 (Arabidopsis thaliana), 3'ss of exon 5
tttttttcccaaattttacattttatctggcaaaagtaattcatcatgtggaatttgctagttgttgt-----gaactgatattggcatttatttgttgatc-tagTTAATGCAGAGGTTGTGCTGAAAGCTACAAATGTTGATGGGGTTTTCGATGATGACCCCAGGCGTAACCCAAATGCTCGTCTCCTTGATTCTCTTACTTA
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----------------------gtaagtaa-agaggtggtttccgtttaagttttctccaatgattattcgcaacactaaaaaaaaacttttcgcattggacacagTTAATGCAGAAGTAGTGCTGAAAGCAACAAATGTTGATGGCGTGTTCGACGATGATCCTAAAAGAAACCCAAACGCTCGTCTGCTTGACTCACTAACTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtggaatttgctagttgttgtgaactgatattggcatttatttgttgatctagTTAATGCAGAGGTTGTGCTGAAAGCTACAAATGTTGATGGGGTTTTCGATGATGACCCCAGGCGTAACCCAAATGCTCGTCTCCTTGATTCTCTTACTTA
atttatttgttgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttttcccaaattttacattttatctggcaaaagtaattcatcatgtggaatttgctagttgttgtgaactgatattggcatttatttgttgatctagTTAATGCAGAGGTTGTGCTGAAAGCTACAAATGTTGATGGGGTTTTCGATGATGACCCCAGGCGTAACCCAAATGCTCGTCTCCTTGATTCTCTTACTTA
- - - -cccaaat
- - - - - - - - - - - - - - ggcaaaa
- - - - - - - - - - - - - - - - - - - - - - catgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtg