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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttctaaatcttcacagcccatctgagaatatggttctggcatcagtgtattcgggtttttttttttacttacaaaacagctacacctccatgcagGCAACAGCAGAAGAGAAATTCAAACTGTGTGTCAATGCATACAAATCATTGTGCAATGCTCTCTCCACAGTTTAATCCTTTAGGTTTTCATTCAAATTCA

Basic information

species Vitis vinifera
transcript Vv04s0044g00490.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34363728|gb|CF405313.1|CF405313
EST:     GTTTATCTGCTCTAAAATGGCATCCTGATAAACATCAAGGCCCTTCACAG                         GCAACAGCAGAAGAGAAATTCAAACTGTGTGTCAATGCATACAAATCATTG
genomic: GTTTATCTGCTCTAAAATGGCATCCTGATAAACATCAAGGCCCTTCACAGgttagtttct ... ctccatgcagGCAACAGCAGAAGAGAAATTCAAACTGTGTGTCAATGCATACAAATCATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcagtgtattcgggtttttttttttacttacaaaacagctacacctccatgcagGCAACAGCAGAAGAGAAATTCAAACTGTGTGTCAATGCATACAAATCATTGTGCAATGCTCTCTCCACAGTTTAATCCTTTAGGTTTTCATTCAAATTCA
                         tacttac  putative branch site (score: 1)
                                          cacctcc  putative PPT
               tttttttttttactta  TA-rich tract