Sequence
atgc intronic sequence ATGC exonic sequencegtaataccaataacctgaaactagttacgtcactccaatagaactgtgtgcatattctgtgcacttataaccgactactcttttgccgctgatcttttcattagGTTGGGAAGAACCTGCATGTCCTTGGCCAGCTAGAGGGTGTTGATCTCGATATGTACAAAGAAACAGTCCTTCCCAGAGTTTTGGAGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g03870.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 3'ss of exon 6
gtaataccaataacctgaaactagttacgtcactccaatagaactgtgtgcatattctgtgcacttataaccgactactcttttgccgctgatcttttcattagGTTGGGAAGAACCTGCATGTCCTTGGCCAGCTAGAGGGTGTTGATCTCGATATGTACAAAGAAACAGTCCTTCCCAGAGTTTTGGAGCAG
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---------gtaatc----atcaattacatgtattccctaca-ctacatgt-tctttggtgtcatttcaat-gacattgctactgttctt--tcttttttctagGTAGGCAAAAACCTTCACGTTCTAAGCCAGATTGAGGGTGTTGACCTTGACATGTACAAAGAAACTGTCCTTCCAAGGATATTAGAACAG
upper sequence: Vv04s0023g03870.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM5G825524_T02 (Zea mays), 3'ss of exon 6
gtaataccaataacctgaaactagttacgtcactccaatagaactgtgtgcatattctgtgcacttataaccgactactcttttgccgctgatcttttcattagGTTGGGAAGAACCTGCATGTCCTTGGCCAGCTAGAGGGTGTTGATCTCGATATGTACAAAGAAACAGTCCTTCCCAGAGTTTTGGAGCAG
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gtaat-tcagtgac----agctggatattctactc------aactgtat-----tttcgaagtcatgcaaattggcattatttttt---taatcttcttgt-agGTAGGCAAAAACCTTCATGTTCTAAGCCAGATTGAGGGTGTTGACCTTGATATGTACAAAGAAACTGTTCTTCCAAGGATATTAGAGCAG
upper sequence: Vv04s0023g03870.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G36870.1 (Glycine max), 3'ss of exon 6
gtaataccaataacctgaaactagtt-acgtcactccaatagaactgtgtgcat-attctgtgcacttataa----ccgactactcttttgccgctgatcttttcattagGTTGGGAAGAACCTGCATGTCCTTGGCCAGCTAGAGGGTGTTGATCTCGATATGTACAAAGAAACAGTCCTTCCCAGAGTTTTGGAGCAG
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gtaatacctgaagcctagaactggtttgcttctctgcaatggggttgtttaaatgatgaaatgcttatagaaggcttctcttgcttttttgtccttgatacatt-attagGTTGGAAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTTGACCTAGATATGTACAAAGATGCTGTGCTTCCCAGAGTACTGGAGCAG
upper sequence: Vv04s0023g03870.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G08390.1 (Glycine max), 3'ss of exon 6
gtaataccaataacctgaaactagtt-acgtcactccaatagaactgtgtgcatattctgtgcacttataaccgact------actcttttgccgctgatcttttcattagGTTGGGAAGAACCTGCATGTCCTTGGCCAGCTAGAGGGTGTTGATCTCGATATGTACAAAGAAACAGTCCTTCCCAGAGTTTTGGAGCAG
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gtaatacctgaagcttgttactggtttgcttctctgcaatggggttgtataaatgatgaa-atgcttatagaaggcttttcttgcttttttgtccttgatacata-attagGTTGGCAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTTGACCTAGATATGTACAAAGATGTTGTGCTTCCCAGAGTACTGGAGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcatattctgtgcacttataaccgactactcttttgccgctgatcttttcattagGTTGGGAAGAACCTGCATGTCCTTGGCCAGCTAGAGGGTGTTGATCTCGATATGTACAAAGAAACAGTCCTTCCCAGAGTTTTGGAGCAG
tcttttcatt CT-rich tract
ttttcatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaataccaataacctgaaactagttacgtcactccaatagaactgtgtgcatattctgtgcacttataaccgactactcttttgccgctgatcttttcattagGTTGGGAAGAACCTGCATGTCCTTGGCCAGCTAGAGGGTGTTGATCTCGATATGTACAAAGAAACAGTCCTTCCCAGAGTTTTGGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG