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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacaataatattcattgtttgaagccctccaccacaactctaataataaatctgaaagaactgaggtaaccagttgaataaaatgatcatttgtcttctaatatctgttttttatttgtgttattggtttctatacttattttgtagATGATATGCCAAAGTTAGTTCGAGGAGACTCTGCTAGAGTTGTTCAAATATTTGCAAATCTAATCAGCAATTCTATCAAGTTTACAACAT

Basic information

species Vitis vinifera
transcript Vv04s0023g03680.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G08310.1 (Glycine max), 3'ss of exon 6
gtatgacaataatattcattgtttgaagccctccaccacaactctaataataaatctgaaagaactgaggtaaccagttgaata-aaatgatcatttgtcttctaatatctgttttttatttgtgttattggtttctatacttattttgtagATGATATGCCAAAGTTAGTTCGAGGAGACTCTGCTAGAGTTGTTCAAATATTTGCAAATCTAATCAGCAATTCTATCAAGTTTACAACAT
                                     |  | ||| ||  |     ||| |||  | |      ||||  ||   | ||||| |   ||  | | | |   | |||| ||   | |      |  || |   |||  || |||||||||||||||| |||| || ||||| ||||| ||||| |||||||||||||||||||| |||| |||||| |||||||||||  |||
-----------------------------------gtatgattctcattttggtaatgagagattttaatc--tcagtgaaaagtagatgattagaagttctttta-acaagcttttaatccatctagccaataactgt---tatcctgcagATGATATGCCAAAGGTAGTCCGTGGAGATTCTGCGAGAGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTTACTCCAT

upper sequence: Vv04s0023g03680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G36950.1 (Glycine max), 3'ss of exon 6
gtatgacaataatattcattgtttgaagccctccaccacaactctaataataaatctgaaagaactgaggtaaccagttgaataa--aatgatcatttgtcttctaatatctgttttttatttgtgttattggtttctatacttattttgtagATGATATGCCAAAGTTAGTTCGAGGAGACTCTGCTAGAGTTGTTCAAATATTTGCAAATCTAATCAGCAATTCTATCAAGTTTACAACAT
                                                                 |  | |   || ||  | ||   ||||| |   ||  | | | |   | |||| ||   | |      |  || |   |||  || |||||| |||||||||||||||   || || ||||| || || |||||||||||||||||||| |||| |||||| |||||||||||  |||
----------------------------------------------------------------gtatgatcctcattttgaaaatagatgattagaagttctttta-acaagcttttaatgcatctagccaataactgt---tatcctgcagATGACATGCCAAAGTTAGTTAAGGGTGATTCTGCAAGGGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTTACTCCAT

upper sequence: Vv04s0023g03680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G05220.1 (Glycine max), 3'ss of exon 6
gtatgacaataatattcattgtttgaagccctccaccacaactctaataataaatctgaaagaactgaggtaaccagttgaataaaatgatcatttgtcttctaatatctgttttttatttgtgttattggtttctatacttattttgtagATGATATGCCAAAGTTAGTTCGAGGAGACTCTGCTAGAGTTGTTCAAATATTTGCAAATCTAATCAGCAATTCTATCAAGTTTACAACAT
                                       |    ||| | |   |||| |  |       ||||   |     |||||||    |  |  || |  |   |||| | || | | |  ||  ||| |          || |||||||||||||||| ||||||| || || |||||||| || |||||||| ||||||||| | |||| ||| || || ||||||||   ||
-------------------------------------gtatgaataacattttgtctgcataagagagtttaact--tcagtcaaaatga--ggtcataatc-atcacaagtttctgatgtatctagtttatttgt----------tgcagATGATATGCCAAAGCTAGTTCGGGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCAATTAAGTTTACTCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttctaatatctgttttttatttgtgttattggtttctatacttattttgtagATGATATGCCAAAGTTAGTTCGAGGAGACTCTGCTAGAGTTGTTCAAATATTTGCAAATCTAATCAGCAATTCTATCAAGTTTACAACAT
   ttctaat  putative branch site (score: 2)
                                           cttatttt  putative PPT
      taatatctgtttttta  TA-rich tract