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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaactgcaacttctgctatgctcctggattttttcttcttaaatggttggtgaattcagtgtttacatgtggggcctctgcagATCTTCACAAATGCGTTTCCTGTTCATTATAGTCCTCCAAATGGTTTCGGTTTTGAAATCGATGATTTCTCCATACCTGTCCAG

Basic information

species Vitis vinifera
transcript Vv04s0023g03650.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03650.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G36980.1 (Glycine max), 3'ss of exon 5
gtttgaactgcaacttctgctatgctcctggattttttcttcttaaatggttggtgaattcagtgtttacatgtggggcctctgcagATCTTCACAAATGCGTTTCCTGTTCATTATAGTCCTCCAAATGGTTTCGGTTTTGAAATCGATGATTTCTCCATACCTGTCCAG
||| | | ||  |  |||    |  ||    |  || | ||         ||  | |||| |   |||   |      | ||| ||||| ||  | ||||| |||||||||||||||||||| |||| ||||||   |||||||||| |||||  ||   | || || |||
gttaggattgtgatatctttagtcatcaacaaaattatttt-------aattttttaatttaccttttgtgt------cttctacagATTTTTGCCAATGCTTTTCCTGTTCATTATAGTCCCCCAAGTGGTTTTCATTTTGAAATCAATGATGACTTTGTTCCCGTACAG

upper sequence: Vv04s0023g03650.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G23600.1 (Glycine max), 3'ss of exon 5
gtttgaactgcaacttctg--ctatgctcctggattttttcttcttaaatggttggtgaattcagtgtttacatgtggggcctctgcagATCTTCACAAATGCGTTTCCTGTTCATTATAGTCCTCCAAATGGTTTCGGTTTTGAAATCGATGATTTC----TCCATACCTGTCCAG-----
|||||   |||||||| ||  | ||  |  ||  |  || |||| |   ||  |         | || || ||  |  |   | ||||||| ||  | ||| | || ||||||||||||||| ||||||||||||||   |||||| || || ||       |  ||    |||| |     
gtttggcttgcaacttatgtaccattattatgactcattccttcctt--tgactaaaattactaatggtttcaactttgaaat-tgcagATTTTTGCCAATACTTTCCCTGTTCATTATAGTGCTCCAAATGGTTTCAACTTTGAAGTCAATAATCCTGATGTTGATGTTGGTCCCGTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttcttcttaaatggttggtgaattcagtgtttacatgtggggcctctgcagATCTTCACAAATGCGTTTCCTGTTCATTATAGTCCTCCAAATGGTTTCGGTTTTGAAATCGATGATTTCTCCATACCTGTCCAG
                                              cctctgc  CT-rich tract
       ttcttaaat  TA-rich tract