1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaatctttcttgagtgtttttccccctctatattggatgttctgttgtgcttgtattttttctcttcctgagtatgcttattggtctgcctaacatccagGTCCTTAAGAACAAGCCTGATTTTCGCCGCAAACCATGGCCAACCATAAGCAATGGTGCTAAAGATTTTGTAAAGAAGTTACTAGTGAAAGACCCTCGGG
species | Vitis vinifera |
transcript | Vv04s0023g03420.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGGGAAGCGCCCCTTCTGGGATAAGACTGAGGATGGAATTTTCAAGGAG GTCCTTAAGAACAAGCCTGATTTTCGCCGCAAACCATGGCCAACCATAAGCEST: gi|161714014|gb|FC064089.1|FC064089
genomic: GTGGGAAGCGCCCCTTCTGGGATAAGACTGAGGATGGAATTTTCAAGGAGgtgcggtgca ... taacatccagGTCCTTAAGAACAAGCCTGATTTTCGCCGCAAACCATGGCCAACCATAAGC
EST: GTGGGAAGCGCCCCTTCTGGGATAAGACTGAGGATGGAATTTTCAAGGAG GTCCTTAAGAACAAGCCTGATTTTCGCCGCAAACCATGGCCAACCATAAGCEST: gi|30255725|gb|CB971857.1|CB971857
genomic: GTGGGAAGCGCCCCTTCTGGGATAAGACTGAGGATGGAATTTTCAAGGAGgtgcggtgca ... taacatccagGTCCTTAAGAACAAGCCTGATTTTCGCCGCAAACCATGGCCAACCATAAGC
EST: GTGGGAAGCGCCCCTTCTGGGATAAGACTGAGGATGGAATTTTCAAGGAG GTCCTTAAGAACAAGCCTGATTTTCGCCGCAAACCATGGCCAACCATAAGC
genomic: GTGGGAAGCGCCCCTTCTGGGATAAGACTGAGGATGGAATTTTCAAGGAGgtgcggtgca ... taacatccagGTCCTTAAGAACAAGCCTGATTTTCGCCGCAAACCATGGCCAACCATAAGC
tgtgcttgtattttttctcttcctgagtatgcttattggtctgcctaacatccagGTCCTTAAGAACAAGCCTGATTTTCGCCGCAAACCATGGCCAACCATAAGCAATGGTGCTAAAGATTTTGTAAAGAAGTTACTAGTGAAAGACCCTCGGG
gcctaac putative branch site (score: 2)
tctgcct CT-rich tract
ttgtatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatctttcttgagtgtttttccccctctatattggatgttctgttgtgcttgtattttttctcttcctgagtatgcttattggtctgcctaacatccagGTCCTTAAGAACAAGCCTGATTTTCGCCGCAAACCATGGCCAACCATAAGCAATGGTGCTAAAGATTTTGTAAAGAAGTTACTAGTGAAAGACCCTCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - tgagtgt
- - - - - - - - - - -ccccctc
- - - - - - - - - - - - - - - - -tggatgt
- - - - - - - - - - - - - - - - - - - - tctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtctgc