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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgactatgaccttcattgattgacatagctgaatttcagatgcaagatatctcctcttacttaattgtagttttctacagACAGTTGAAAGTTCTGCTCGTGAGTTTTTAGGCAATGACAATTCAAGTGTTCTTACATCTACTGTG

Basic information

species Vitis vinifera
transcript Vv04s0023g03060.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03060.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G24250.1 (Glycine max), 3'ss of exon 6
------gtatgactatgaccttcat--tgattgacatagctgaatttcagatgcaagatatctcc-----tcttacttaattgtagttttctacagACAGTTGAAAGTTCTGCTCGTGAGTTTTTAGGCAATGACAATTCAAGTGTTCTTACATCTACTGTG
       | |  ||||     | ||  ||    |   |   ||| || | | |||    ||| |      || ||  ||||   | | |||| |||||| ||||||||||||||||||| ||| | || ||||||||    ||    ||| |  || |||||
gtacttatgttcctatttttgtaattttgtccaagggaagagaactttaca-gcacctcatcgctaagattcctaaataatgtgattcttcttcagACAATTGAAAGTTCTGCTCGTGAATTTCTGGGAAATGACAAAATGAGCTCCCTTTCTGCTTCTGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagctgaatttcagatgcaagatatctcctcttacttaattgtagttttctacagACAGTTGAAAGTTCTGCTCGTGAGTTTTTAGGCAATGACAATTCAAGTGTTCTTACATCTACTGTG
                                             ttttctac  CT-rich tract
                                   ttaattgtagtttt  TA-rich tract