Sequence
atgc intronic sequence ATGC exonic sequence...ctctttttctttttctttttgttggtccatgagaataccttgatttgcttgtataagttatgaactcaaacttcaactttcaaacaccttctcttgtcagCGGCTAGCAGTTGAGATCCTGGTATCAGGATTTGTATTTCAGGAGGAAGATTTTATAAGTCCTTGGGAAGGACAAAATAATAACTTGGAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02940.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G05680.1 (Glycine max), 3'ss of exon 6
-----------------------------------------------------------------------------------------ctctttttctttttctttttgttggtccatgagaataccttgatttgcttgta-taagttatgaactcaaacttcaactttcaaacaccttctcttgtcagCGGCTAGCAGTTGAGATCCTGGTATCAGGATTTGTATTTCAGGAGGAAGATTTTATAAGTCCTTGGGAAGGACAAAATAATAACTTGGAAAG
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gtaggttttgatatctttcgcatccctgttttcttgtgacatagcttgcttaaattgagctgtgaattgtgatctatgtttttgtgtgtgcatgtgtgaactttgtctcgcctttcttgtagtatcaaatgatacttctgcacttggttattatttcaaattagattcttgttgaacttcttcttg-cagAGGCTAGGGGTTGAGATCTTAGTCTCAGGATTTGTCTTTGAGAAGGAAGATTTTATAAGGCCATGGGAAGGACAGAATGACAACTTGGAGAG
upper sequence: Vv04s0023g02940.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G24310.1 (Glycine max), 3'ss of exon 6
----------------------------------------------------------ctctttttctttttctttttgttggtccatgagaa---taccttgatttgcttgtata-----agttatgaactcaaacttcaactttcaaacaccttctcttgtcagCGGCTAGCAGTTGAGATCCTGGTATCAGGATTTGTATTTCAGGAGGAAGATTTTATAAGTCCTTGGGAAGGACAAAATAATAACTTGGAAAG
| ||| | | | | ||| | ||| ||| | || ||| ||| ||||| | ||||| || | | | | ||||| | ||| | |||| ||||||||| | || || |||||||| ||| | |||||||||||||||| || ||||||||||| ||| | |||||||| ||
gtaggttttgatatctttcacatccctgttttcttgtgacattgcttgcttaaattgagctgtgatctatgtttctgtgtgtgcatatgtgaactttgtctcaccttgtacctatgcacctggttattatttcaaa-ttagattcttgttgaacttctgcttgcagAGACTAGGGGTTGAGATCTTAGTCTCTGGATTTGTCTTTGAAAAGGAAGATTTTATAAGGCCATGGGAAGGACAGAATGACAACTTGGAGAG
upper sequence: Vv04s0023g02940.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G17160.1 (Glycine max), 3'ss of exon 4
ctctttttctttttctttttgttggtccatgagaataccttgatttgcttgtataagttatgaactcaaacttcaactttcaaacaccttctctt-gtcagCGGCTAGCAGTTGAGATCCTGGTATCAGGATTTGTATTTCAGGAGGAAGATTTTATAAGTCCTTGGGAAGGACAAAATAATAACTTGGAAAG
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------------------------------------------gtaggttttgatacctttcacatccctgttttcttgtgacattgcttgcttgcagagactagGTAGGGGTTGAGATCTTAGCCTCTAGATTTGTCTTTGAAAAGGAAGATTTTATAAGGCCATGGGAAGGACAGAATTACAACTTGGAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcttgtataagttatgaactcaaacttcaactttcaaacaccttctcttgtcagCGGCTAGCAGTTGAGATCCTGGTATCAGGATTTGTATTTCAGGAGGAAGATTTTATAAGTCCTTGGGAAGGACAAAATAATAACTTGGAAAG
caccttctcttgtc CT-rich tract
tataagttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctctttttctttttctttttgttggtccatgagaataccttgatttgcttgtataagttatgaactcaaacttcaactttcaaacaccttctcttgtcagCGGCTAGCAGTTGAGATCCTGGTATCAGGATTTGTATTTCAGGAGGAAGATTTTATAAGTCCTTGGGAAGGACAAAATAATAACTTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - -tgttggt
- - - - - - - - - - - - - -catgaga
- - - - - - - - - - - - - - - - - -taccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacacc