Sequence
atgc intronic sequence ATGC exonic sequencegtgagtatcataagtgtagttgagaagtgtttttcattacttggatatctatgaggttcaatctttgtttttgttttctaaagtgttttcgggttgtcttctttttcttaatcctagGAAATTCATGCACTAAGGGCTCAGTTGGAAGCTGCAAAGTACGATGTGATAAAATACTGCATAGGTACCCTTGTTTCTATTTCAGCTGTGGGTCTTGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02920.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os06g49890.1 (Oryza sativa), 3'ss of exon 6
gtgagtatcataagtgtagttgagaagtgtttttcattacttggatatctatgaggttcaatctttgtttttgttttctaaagtgttttcggg--ttgtcttcttt-ttcttaatcctagGAAATTCATGCACTAAGGGCTCAGTTGGAAGCTGCAAAGTACGATGTGATAAAATACTGCATAGGTACCCTTGTTTCTATTTCAGCTGTGGGTCTTGCTG
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-----------------------------------gtgagtaaagtggccttcatgtgtgggctctgttatctcactgtcgggcattaacagggtttgtctgatttgctactgttggcagGAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATCAAGTACTGCATAGGTACCATTGTTTCGATATCAGCTGTTGGACTCGCCG
upper sequence: Vv04s0023g02920.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G116427_T01 (Zea mays), 3'ss of exon 6
gtgagtatcataagtgtagttgagaagtgtttttcattacttggatatctatgaggttca-atctttgtttttgttttctaaagtgttttcgggttgtcttctttttcttaatcctagGAAATTCATGCACTAAGGGCTCAGTTGGAAGCTGCAAAGTACGATGTGATAAAATACTGCATAGGTACCCTTGTTTCTATTTCAGCTGTGGGTCTTGCTG
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-------------------gtgagtggtagtaaactaaggccgcatgcccatgctttccgtgtcatcgtttacatc----agagaccaaccaaaatgttttgccggccatatgc--agGAAATCCACTCACTGAAGGCCCAGTTGGAGGCAGCAAAGTACGATGTCATCAAGTACTGCATAGGTACCATTGTTTCGATCTCAGCCGTCGGCCTCGCCG
upper sequence: Vv04s0023g02920.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G17170.1 (Glycine max), 3'ss of exon 7
gtgagtatcataagtgtagttgagaagtgtttttcattacttggatatctatgaggttcaatctttgtt-tttgttttctaaagtgttttcgggttgtcttctttttcttaatcctagGAAATTCATGCACTAAGGGCTCAGTTGGAAGCTGCAAAGTACGATGTGATAAAATACTGCATAGGTACCCTTGTTTCTATTTCAGCTGTGGGTCTTGCTG
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--------tatgaaacaagcctt-atgtgacatttagaagttgttatttcatcccatggaaacttggctatttgcattttaaacaccctttg-------ctataattcatattc--agGAGATCCATTCTTTAAGAGCACAACTGGAAGCAGCCAAATATGATGTCATAAAATACTGCATAGGAACACTTGTTTCGATCTCTGCTGTTGGTCTTGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttgtttttgttttctaaagtgttttcgggttgtcttctttttcttaatcctagGAAATTCATGCACTAAGGGCTCAGTTGGAAGCTGCAAAGTACGATGTGATAAAATACTGCATAGGTACCCTTGTTTCTATTTCAGCTGTGGGTCTTGCTG
ttgtcttctttttctt CT-rich tract
tttttgttttctaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtatcataagtgtagttgagaagtgtttttcattacttggatatctatgaggttcaatctttgtttttgttttctaaagtgttttcgggttgtcttctttttcttaatcctagGAAATTCATGCACTAAGGGCTCAGTTGGAAGCTGCAAAGTACGATGTGATAAAATACTGCATAGGTACCCTTGTTTCTATTTCAGCTGTGGGTCTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG