Sequence
atgc intronic sequence ATGC exonic sequence...caaacaacaaatgaatgaatatctgattcttctgtcttcaattttcgttaaactccaaaatgctattgacatttttaaacttgattttctttattggcagATCCTAGGACCTGATAGTGGTTGGCAACCAATTCCATTAACGGATGTTATAACTGCTGTTGCTGTAAAGAAAGCTTATAGAAAAGCCACTCTTTGTGTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G06160.1 (Glycine max), 3'ss of exon 13
caaacaacaaatgaatgaatatctgattcttctgtcttcaattttcgttaaactccaaaatgctattgacatttttaaacttgattttctt-tattggcagATCCTAGGACCTGATAGTGGTTGGCAACCAATTCCATTAACGGATGTTATAACTGCTGTTGCTGTAAAGAAAGCTTATAGAAAAGCCACTCTTTGTGTTC
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-cttccttatatcatcctttttccccctattaggaacatatgcttatcctcataacaaaactctatttgctgttccttatctaattttttcattttgtcagATTCTTGGGCCTGATAGTGGGTGGCAGCCAATCCCACTCACGGACGTCATTACTTCTGCTGCTGTAAAGAAGGCTTATAGGAAGGCCACCCTTTGTGTCC
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G25190.1 (Glycine max), 3'ss of exon 8
------caaacaacaaatgaatgaatatctgattcttctgtcttcaattttcgttaaactccaaaatgctattgacatttttaaacttgattttctttattggcagATCCTAGGACCTGATAGTGGTTGGCAACCAATTCCATTAACGGATGTTATAACTGCTGTTGCTGTAAAGAAAGCTTATAGAAAAGCCACTCTTTGTGTTC
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tttttaccatctctttctcccccactatttggaacatttcctt---atcttgattaa---ctagactctccatgttgttccttatctaattttttcatcttgtcagATTCTTGGGCCTGATAGTGGCTGGCAGCCAATCCCACTCACAGACGTCATTACTTCTGCTGCTGTAAAGAAAGCTTACAGGAAGGCCACCCTTTGTGTCC
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G25150.1 (Glycine max), 3'ss of exon 6
caaacaacaaatgaatgaatatctgattcttctgtcttcaat-tttcgttaaact------ccaaaatgctattgacatttttaaacttgattttctttattggcagATCCTAGGACCTGATAGTGGTTGGCAACCAATTCCATTAACGGATGTTATAACTGCTGTTGCTGTAAAGAAAGCTTATAGAAAAGCCACTCTTTGTGTTC
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-------catctctttctcccccccccccccctatttggaatatttccttatcctgattaactagactctccatgttgttccttatctaattttttcatcttgtcagATTCTTGGGCCTGATAGTGGCTGGCAGCCAATCCCACTCACGGACGTCATTACTTCTGCCGCTGTAAAGAAAACTTACAGGAAGGCCACCCTTTGTGTCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgttaaactccaaaatgctattgacatttttaaacttgattttctttattggcagATCCTAGGACCTGATAGTGGTTGGCAACCAATTCCATTAACGGATGTTATAACTGCTGTTGCTGTAAAGAAAGCTTATAGAAAAGCCACTCTTTGTGTTC
ttttctttatt CT-rich tract
acatttttaaacttga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caaacaacaaatgaatgaatatctgattcttctgtcttcaattttcgttaaactccaaaatgctattgacatttttaaacttgattttctttattggcagATCCTAGGACCTGATAGTGGTTGGCAACCAATTCCATTAACGGATGTTATAACTGCTGTTGCTGTAAAGAAAGCTTATAGAAAAGCCACTCTTTGTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
caaacaa
- - - - aaatgaa
- - - - - - - - - - - ctgattc
- - - - - - - - - - - - - - -ttctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - ctccaaa