1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtccaaatccagttcagatttattctagttttggtctggcattggctaatgaaatgcttggatccaaagctgattttccagtaattttggtggttctatggaatgcacttgctaattttcattttttcctttctttgatagTTTTCTATGTCCGGAAGTCATCCTTATCACAAATCATGCTACAAGGAACAAAATCATCCAAAATGTGATGTTTGCAGGAACTTT
species | Vitis vinifera |
transcript | Vv04s0023g01030.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGAATGTTTTCGTTGCCGTGCTTGTGGGCTTCCCATTGTTGAACATGAG TTTTCTATGTCCGGAAGTCACCCTTATCACAAATCATGCTACAAGGAACAAEST: gi|46917880|gb|CN547209.1|CN547209
genomic: CAGAATGTTTTCGTTGCCGTGCTTGTGGGCTTCCCATTTTTGAACATGAGgtccaaatcc ... tctttgatagTTTTCTATGTCCGGAAGTCATCCTTATCACAAATCATGCTACAAGGAACAA
EST: CAGAATGTTTTCGTTGCCGTGCTTGTGGGCTTCCCATTTTTGAACATGAG TTTTCTATGTCCGEST: gi|46917879|gb|CN547208.1|CN547208
genomic: CAGAATGTTTTCGTTGCCGTGCTTGTGGGCTTCCCATTTTTGAACATGAGgtccaaatcc ... tctttgatagTTTTCTATGTCCG
EST: CAGAATGTTTTCGTTGCCGTGCTTGTGGGCTTCCCATTTTTGAACATGAG TTTTCTATGTCCGGAAGTCACCCTTATCACAAATCATGCTACAAGGAACAA
genomic: CAGAATGTTTTCGTTGCCGTGCTTGTGGGCTTCCCATTTTTGAACATGAGgtccaaatcc ... tctttgatagTTTTCTATGTCCGGAAGTCATCCTTATCACAAATCATGCTACAAGGAACAA
ttggtggttctatggaatgcacttgctaattttcattttttcctttctttgatagTTTTCTATGTCCGGAAGTCATCCTTATCACAAATCATGCTACAAGGAACAAAATCATCCAAAATGTGATGTTTGCAGGAACTTT
tgctaat putative branch site (score: 2)
cttgctaattttcatt CT-rich tract
taattttcatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccaaatccagttcagatttattctagttttggtctggcattggctaatgaaatgcttggatccaaagctgattttccagtaattttggtggttctatggaatgcacttgctaattttcattttttcctttctttgatagTTTTCTATGTCCGGAAGTCATCCTTATCACAAATCATGCTACAAGGAACAAAATCATCCAAAATGTGATGTTTGCAGGAACTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA