1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tattgtgtgcgtgtggagttacataagcaattagttcagttaccacattgagagtattccaaggatcctacttattgattcttttccaatgcacttgcagTGTCGATGACGGATTTCCAACTGTCACCCTTCATTTTGACAAGTCAATTTCTTTGACAGTGTATCCTCATGAGTATCTGTTCCAAGTTAAG
species | Vitis vinifera |
transcript | Vv04s0023g00730.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGACTACACACTGTTGAACAAGCATTCACATGCTTTGACTACACTGGAAA TGTCGATGACGGATTTCCAACTGTCACCCTTCATTTTGACAAGTCAATTTCEST: gi|110393757|gb|EC959222.1|EC959222
genomic: AGACTACACACTGTTGAACAAGCATTCACATGCTTTGACTACACTGGAAAgtaaggacca ... gcacttgcagTGTCGATGACGGATTTCCAACTGTCACCCTTCATTTTGACAAGTCAATTTC
EST: AGACTACACACTGTTGAACAAGCATTCACATGCTTTGACTACACTGGAAA TGTCGATGACGGATTTCCAACTGTCACCCTTCATTTTGACAAGTCAATTTCEST: gi|110389046|gb|EC953857.1|EC953857
genomic: AGACTACACACTGTTGAACAAGCATTCACATGCTTTGACTACACTGGAAAgtaaggacca ... gcacttgcagTGTCGATGACGGATTTCCAACTGTCACCCTTCATTTTGACAAGTCAATTTC
EST: AGACTACACACTGTTGAACAAGCATTCACATGCTTTGACTACACTGGAAA TGTCGATGACGGATTTCCAACTGTCACCCTTCATTTTGACAAGTCAATTTC
genomic: AGACTACACACTGTTGAACAAGCATTCACATGCTTTGACTACACTGGAAAgtaaggacca ... gcacttgcagTGTCGATGACGGATTTCCAACTGTCACCCTTCATTTTGACAAGTCAATTTC
cattgagagtattccaaggatcctacttattgattcttttccaatgcacttgcagTGTCGATGACGGATTTCCAACTGTCACCCTTCATTTTGACAAGTCAATTTCTTTGACAGTGTATCCTCATGAGTATCTGTTCCAAGTTAAG
tattgat putative branch site (score: 3)
ttattgattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgtgtgcgtgtggagttacataagcaattagttcagttaccacattgagagtattccaaggatcctacttattgattcttttccaatgcacttgcagTGTCGATGACGGATTTCCAACTGTCACCCTTCATTTTGACAAGTCAATTTCTTTGACAGTGTATCCTCATGAGTATCTGTTCCAAGTTAAG
- -tgtgtgc
- - - - - - - - - - - ataagcaa
- - - - - - - - - - - - - - - - - - - - - ccacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctactt