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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttattgtcattcatttctttttatatcttaatttatgcatggtggattttggtttgcttctaggaacctttttatcaagggaatgtgagcggtactgctgatatatttctgttataatgctgttatattctgcttcttgttacagGGTGTGCTTGCACTTTTCGGTATGTTCAATTCAGAAGGAAAACCAATATTGTTGTGCTCTTGCAATGACAATTCTGTTCGGCTATATGAATTACCATC

Basic information

species Vitis vinifera
transcript Vv04s0023g00220.t01
intron # 6
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtactgctgatatatttctgttataatgctgttatattctgcttcttgttacagGGTGTGCTTGCACTTTTCGGTATGTTCAATTCAGAAGGAAAACCAATATTGTTGTGCTCTTGCAATGACAATTCTGTTCGGCTATATGAATTACCATC
     tgctgat  putative branch site (score: 3)
                                     ttctgcttcttgtt  putative PPT
          atatatttctgttata  TA-rich tract