1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acccaatgtggtgacaattttctctgctcttgatggaattcttagaactttggttcatgattcatctgatggttcagctcactgttttaatgtaaattagGATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTGCACAAGATAAAAAACCGCCAATGGGCTATTTTTAAAACTTGCGCCATAA
species | Vitis vinifera |
transcript | Vv04s0008g07360.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAAGAAGAATTGAAAGGCGCCATTGTCCTCATCTTTGCAAACAAGCAG GATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTGEST: gi|33406636|gb|CF212263.1|CF212263
genomic: GAAGAAGAATTGAAAGGCGCCATTGTCCTCATCTTTGCAAACAAGCAGgttactacca ... tgtaaattagGATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTG
EST: GAAGAAGAATTGAAAGGCGCCATTGTCCTCATCTTTGCAAACAAGCAG GATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTGEST: gi|30126854|gb|CB912193.1|CB912193
genomic: GAAGAAGAATTGAAAGGCGCCATTGTCCTCATCTTTGCAAACAAGCAGgttactacca ... tgtaaattagGATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTG
EST: GAAGAAGAATTGAAAGGCGCCATTGTCCTCATCTTTGCAAACAAGCAG GATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTGEST: gi|33408309|gb|CF213936.1|CF213936
genomic: GAAGAAGAATTGAAAGGCGCCATTGTCCTCATCTTTGCAAACAAGCAGgttactacca ... tgtaaattagGATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTG
EST: GAAGAAGAATTGAAAGGCGCCATTGTCCTCATCTTTGCAAACAAGCAG GATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTGEST: gi|33408221|gb|CF213848.1|CF213848
genomic: GAAGAAGAATTGAAAGGCGCCATTGTCCTCATCTTTGCAAACAAGCAGgttactacca ... tgtaaattagGATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTG
EST: GAAGAAGAATTGAAAGGCGCCATTGTCCTCATCTTTGCAAACAAGCAG GATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTGEST: gi|110406223|gb|EC971789.1|EC971789
genomic: GAAGAAGAATTGAAAGGCGCCATTGTCCTCATCTTTGCAAACAAGCAGgttactacca ... tgtaaattagGATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTG
EST: GAAGAAGAATTGAAAGGCGCCATTGTCCTCATCTTTGCAAACAAGCAG GATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTG
genomic: GAAGAAGAATTGAAAGGCGCCATTGTCCTCATCTTTGCAAACAAGCAGgttactacca ... tgtaaattagGATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTG
aactttggttcatgattcatctgatggttcagctcactgttttaatgtaaattagGATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTGCACAAGATAAAAAACCGCCAATGGGCTATTTTTAAAACTTGCGCCATAA
ttttaat putative branch site (score: 3)
tgttttaatgtaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccaatgtggtgacaattttctctgctcttgatggaattcttagaactttggttcatgattcatctgatggttcagctcactgttttaatgtaaattagGATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTGCACAAGATAAAAAACCGCCAATGGGCTATTTTTAAAACTTGCGCCATAA
-cccaatg
- - - - tggtgac
- - - - - - - - - - tctctgc
- - - - - - - - - - - - - - cttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - gttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcactg