1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agtttgagtgtttttttctttatctttcaatcgatcacttagatttcaaaacaaaggcaaagcatgaaatatgaatatccgtcattgttgaactctttagGATGGTCATGAAGAGGCCCAAGAAGAGTTGCCTAAGAAAGCAAAGTTGTTCTTCAGTACAGCGCTTCAAAATTGGGATGCAGAATTTTATGTGAAAGTTG
species | Vitis vinifera |
transcript | Vv04s0008g06480.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAAGGATTTCTTGATTCTT GATGGTCATGAAGAGGCCCAAGAAGAGTTGCCTAAGAAAGCAAAGTTATTCEST: gi|71856228|gb|DT005283.1|DT005283
genomic: CAAAGGATTTCTTGATTCTTgtaagttatg ... aactctttagGATGGTCATGAAGAGGCCCAAGAAGAGTTGCCTAAGAAAGCAAAGTTGTTC
EST: ATCGCAATATTGATGTGGAAAATCGCTTGACAAAGGATTTCTTGATTCTT GATGGTCATGAAGAGGCCCA
genomic: ATCGCAATATTGATGTGGAAAATCGCTTGACAAAGGATTTCTTGATTCTTgtaagttatg ... aactctttagGATGGTCATGAAGAGGCCCA
tcaaaacaaaggcaaagcatgaaatatgaatatccgtcattgttgaactctttagGATGGTCATGAAGAGGCCCAAGAAGAGTTGCCTAAGAAAGCAAAGTTGTTCTTCAGTACAGCGCTTCAAAATTGGGATGCAGAATTTTATGTGAAAGTTG
ctcttt CT-rich tract
atgaaatatgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtttgagtgtttttttctttatctttcaatcgatcacttagatttcaaaacaaaggcaaagcatgaaatatgaatatccgtcattgttgaactctttagGATGGTCATGAAGAGGCCCAAGAAGAGTTGCCTAAGAAAGCAAAGTTGTTCTTCAGTACAGCGCTTCAAAATTGGGATGCAGAATTTTATGTGAAAGTTG
- - tgagtgt
- - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaata