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gtatttcaaagggctgaattgaatgggatcacctggtgcctttttctcacttagattactcactttatttgaattgaatttgtagTATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTATTATTTGGAGCAGGCAATCCAGTAATTGAGCAACAAAGG
species | Vitis vinifera |
transcript | Vv04s0008g06040.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCAGAAAATCTTATGCTGGAGAGAGGAGAAAATAAAGAG TATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTAEST: gi|161712612|gb|FC062214.1|FC062214
genomic: GCAGAAAATCTTATGCTGGAGAGAGGAGAAAATAAAGAGgtatttcaaa ... gaatttgtagTATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTA
EST: GCAGAAAATCTTATGCTGGAGAGAGGAGAAAATAAAGAG TATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTAEST: gi|161707802|gb|FC056449.1|FC056449
genomic: GCAGAAAATCTTATGCTGGAGAGAGGAGAAAATAAAGAGgtatttcaaa ... gaatttgtagTATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTA
EST: GAGAAAATAAAGAG TATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTAEST: gi|352787010|gb|FQ476043.1|FQ476043
genomic: GAGAAAATAAAGAGgtatttcaaa ... gaatttgtagTATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTA
EST: GCAGAAAATCTTATGCTGGAGAGAGGAGAAAATAAAGAG TATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTA
genomic: GCAGAAAATCTTATGCTGGAGAGAGGAGAAAATAAAGAGgtatttcaaa ... gaatttgtagTATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTA
acctggtgcctttttctcacttagattactcactttatttgaattgaatttgtagTATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTATTATTTGGAGCAGGCAATCCAGTAATTGAGCAACAAAGG
tactcac putative branch site (score: 1)
tttatttgaattgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcaaagggctgaattgaatgggatcacctggtgcctttttctcacttagattactcactttatttgaattgaatttgtagTATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTATTATTTGGAGCAGGCAATCCAGTAATTGAGCAACAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG