Sequence
atgc intronic sequence ATGC exonic sequence...gtgggaatcagaggtttttcgaaatacatttaacaacttgacaaaagtacgtaatagtgataacgttctgaattatgtgcttcaagtgctcaaattgcagGATATGGGAAAGGTCCCATTGGGGTACATCTTTGCTGCCTTGATACCAGCTGTGATGATAGCGGGCTTATACTTTTTCGACCACAGTGTAGCTTCACAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g04980.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G07390.1 (Glycine max), 3'ss of exon 6
gtgggaatcagaggtttttcgaaatacatt-taacaacttgacaaaagtacgtaatagtgataacgttctgaattatgtgctt--caagtgct-caaattgcagGATATGGGAAAGGTCCCATTGGGGTACATCTTTGCTGCCTTGATACCAGCTGTGATGATAGCGGGCTTATACTTTTTCGACCACAGTGTAGCTTCACAGA
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--ttaggttagggtgttggggttcaacattgtgataac--aagcagtgatcattttagtttaggcaagtcaaaatatctatctaatagttactgcaaactgcagGACATGGGGAAGGTACCAGTGGTTTATATATTTGGGGCAATTATTCCAGCTCTGATGATAGCAGGCTTATACTTTTTCGATCACAGCGTAGCTTCGCAGA
upper sequence: Vv04s0008g04980.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G07480.1 (Glycine max), 3'ss of exon 7
gtgggaatcagaggtttttcgaaatacatttaacaacttgacaaaagtacgtaatagtgataacgttctga-attatgtgcttcaagtgctcaaa-ttgcagGATATGGGAAAGGTCCCATTGGGGTACATCTTTGCTGCCTTGATACCAGCTGTGATGATAGCGGGCTTATACTTTTTCGACCACAGTGTAGCTTCACAGA
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atgttagggtgttggtgttc--aacattgtgaacagcaagcagtgatcattttagtttaggcaagtccaaatatcttatctaacagctactgaaaactgcagGATATGGGGAAGGTACCCGTGGTTTATATATTTGGGGCAATTATTCCAGCTCTGATGATAGCAGGCTTATACTTTTTCGATCACAGCGTAGCTTCGCAGA
upper sequence: Vv04s0008g04980.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G25430.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgggaatcagaggtttttcgaaatacatttaacaacttgacaaaagtacgtaatagtgataacgttctgaattatgtgcttcaagtgctcaaattgcagGATATGGGAAAGGTCCCATTGGGGTACATCTTTGCTGCCTTGATACCAGCTGTGATGATAGCGGGCTTATACTTTTTCGACCACAGTGTAGCTTCACAGA
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gtaagatt--aaagatatgcaaaacatgattgagtgatcaatacaaatgcaaaac--ttatagaatacaaaact---tattata-----------tacagGACATGGGGAAGGTACCGATAATGTATATCTTAGCTGCGTTTATACCTGGTGTGATGATAGCAGGACTTTACTTCTTCGACCATAGTGTAGCTTCACAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtacgtaatagtgataacgttctgaattatgtgcttcaagtgctcaaattgcagGATATGGGAAAGGTCCCATTGGGGTACATCTTTGCTGCCTTGATACCAGCTGTGATGATAGCGGGCTTATACTTTTTCGACCACAGTGTAGCTTCACAGA
tgataac putative branch site (score: 2)
tgaattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgggaatcagaggtttttcgaaatacatttaacaacttgacaaaagtacgtaatagtgataacgttctgaattatgtgcttcaagtgctcaaattgcagGATATGGGAAAGGTCCCATTGGGGTACATCTTTGCTGCCTTGATACCAGCTGTGATGATAGCGGGCTTATACTTTTTCGACCACAGTGTAGCTTCACAGA
- - -aatcaga
- - - - - - - - - - gaaatac
- - - - - - - - - - - - - - - - - - - -gacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagtgc