Sequence
atgc intronic sequence ATGC exonic sequence...ttatgtggtatcaacataacaattcattcaatcaattgtatagttttgatgcttgcttctgttgatatttaatttactatttttaaactcataatttcagGCAAGTATTGCATGTTTCAGCCGGAGGTATGTCTCCACAAGTTCAAGCTCGGAATCAGCAACTACCAGGATCTACACCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G30910.1 (Glycine max), 3'ss of exon 5
ttatgtggtatcaacataacaattcattcaatcaattgtatagttttgatgcttgcttctgttgatatttaatttactatttttaaact-cataatttcagGCAAGTATTGCATGTTTCAGCCGGAGGTATGTCTCCACAAGTTCAAGCTCGGAATCAGCAACTACCAGGATCTACACCG
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-tatctattttgctttccacaaattatgttagcatctgatattctttaatctttatagctatggatcttgactttgttagcactaaatttcttgatttcagGCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGATCTACTCCG
upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA14G16040.1 (Glycine max), 3'ss of exon 5
---ttatgtggtatcaacataacaattcattcaatcaattgtatagttttgatgcttgcttctgttgatatttaatttactatttttaaact-cataatttcagGCAAGTATTGCATGTTTCAGCCGGAGGTATGTCTCCACAAGTTCAAGCTCGGAATCAGCAACTACCAGGATCTACACCG
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ccacta-attatattagcatctggtattctttaatc--tggtatt-ctttaatctttatagctatggatgttgactttgttagcactaaatttcttgatttcagGCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTTCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGATCTACTCCT
upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G07580.1 (Glycine max), 3'ss of exon 5
ttatgtggtatcaacataa-caattcattcaatcaattgtatagttttga-tgct-tgcttctgttgatatttaatttactatttttaaact-cataatttcagGCAAGTATTGCATGTTTCAGCCGGAGGTATGTCTCCACAAGTTCAAGCTCGGAATCAGCAACTACCAGGATCTACACCG
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----ttcctattaaaaaaagttatttgacttttaattctcatagcgttaaacactctatatttaagggtgttgactttgtttgcaccaaatttcttgacttcagGCAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCCACAAGTTCAAGCACGTACTCAACAATTACCAGGGTCTACTCTG
upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G07460.1 (Glycine max), 3'ss of exon 5
ttatgtggtatcaacataacaattcattcaa---tcaattgtatagttttga----tgcttgcttctgttgatatttaatttactatttttaaact-cataatttcagGCAAGTATTGCATGTTTCAGCCGGAGGTATGTCTCCACAAGTTCAAGCTCGGAATCAGCAACTACCAGGATCTACACCG
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-------ttcctattaaaaaaagtcatttgatgtttaattct-tagtgtcaaacattctctatatttatgggtgttgaccttgcttgcaccaaatttcttgacttcagGCAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCCACAAGTTCAAGCACGTACTCAACAATTACCAGGGTCTACTCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgatgcttgcttctgttgatatttaatttactatttttaaactcataatttcagGCAAGTATTGCATGTTTCAGCCGGAGGTATGTCTCCACAAGTTCAAGCTCGGAATCAGCAACTACCAGGATCTACACCG
atttaat putative branch site (score: 4)
tgttgatatttaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatgtggtatcaacataacaattcattcaatcaattgtatagttttgatgcttgcttctgttgatatttaatttactatttttaaactcataatttcagGCAAGTATTGCATGTTTCAGCCGGAGGTATGTCTCCACAAGTTCAAGCTCGGAATCAGCAACTACCAGGATCTACACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - aacataa
- - - - - - - - - - - - cattcaa