1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatgcatttgtgtcatccttgaggtttttttttgcacatattagatttctttagttcagtctctgtgttcatgttgggttatttttgtcctaattaacagGGGCTCAGGCAGGAGGTTATCATGGACTTGGTAGATCAGTGTCGGACATACAAGCAAAGAGTGGTCCACCTTGTCAACTCAACTGC
species | Vitis vinifera |
transcript | Vv04s0008g03720.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGATGTCCTTGCAGAAATGCTGAGTGCATTAGATCCAGGAAACAAAGAG GGGCTCAGGCAGGAGGTTATCATGGACTTGGTAGATCAGTGTCGGACATACEST: gi|33406474|gb|CF212101.1|CF212101
genomic: TGGATGTCCTTGCAGAAATGCTGAGTGCATTAGATCCAGGAAACAAAGAGgtatatttgc ... taattaacagGGGCTCAGGCAGGAGGTTATCATGGACTTGGTAGATCAGTGTCGGACATAC
EST: TGGATGTCCTTGCAGAAATGCTGAGTGCATTAGATCCAGGAAACAAAGAG GGGCTCAGGCAGGAGGTTATCATGGACTTGGTAGATCAGTGTCGGACATACEST: gi|18459792|gb|BM438070.1|BM438070
genomic: TGGATGTCCTTGCAGAAATGCTGAGTGCATTAGATCCAGGAAACAAAGAGgtatatttgc ... taattaacagGGGCTCAGGCAGGAGGTTATCATGGACTTGGTAGATCAGTGTCGGACATAC
EST: TGGATGTCCTTGCAGAAATGCTGAGTGCATTAGATCCAGGAAACAAAGAG GGGCTCAGGCAGGAGGTTATCATGGACTTGGTAGATCAGTGTCGGACATAC
genomic: TGGATGTCCTTGCAGAAATGCTGAGTGCATTAGATCCAGGAAACAAAGAGgtatatttgc ... taattaacagGGGCTCAGGCAGGAGGTTATCATGGACTTGGTAGATCAGTGTCGGACATAC
tttctttagttcagtctctgtgttcatgttgggttatttttgtcctaattaacagGGGCTCAGGCAGGAGGTTATCATGGACTTGGTAGATCAGTGTCGGACATACAAGCAAAGAGTGGTCCACCTTGTCAACTCAACTGC
tcctaat putative branch site (score: 2)
tttttgtcct CT-rich tract
ttatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgcatttgtgtcatccttgaggtttttttttgcacatattagatttctttagttcagtctctgtgttcatgttgggttatttttgtcctaattaacagGGGCTCAGGCAGGAGGTTATCATGGACTTGGTAGATCAGTGTCGGACATACAAGCAAAGAGTGGTCCACCTTGTCAACTCAACTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- -gcatttg
- - - - - - tcatcct
- - - - - - - - - - - - - - - - -gcacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cagtctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcatg