Sequence
atgc intronic sequence ATGC exonic sequencegtatgtggtaattgttttgtaattttatgtgtttcaaggtgcatctgcttaatgaaaaccttggattttgatggtgtgttttagCTCTATGCGCCTACAACTTTGGCACCAGCTCGTGACTTCTGGTTGCTCCGTTATACATCTGTTTTGGAGGATGGGAGTCTTGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g03250.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G09100.1 (Glycine max), 3'ss of exon 6
--------gtatgtggtaattgt--tttgta-attttatgtgtttcaaggtgcatctgcttaatgaaaaccttggattttgatggtgtgttttagCTCTATGCGCCTACAACTTTGGCACCAGCTCGTGACTTCTGGTTGCTCCGTTATACATCTGTTTTGGAGGATGGGAGTCTTGTG
|| | | | | | | | |||| || | | | ||| | || | | ||| | || | ||||| | | || ||||| | |||||||| |||||||||||||| | |||||||||||||||||| ||||| ||||| |||||||||| || ||| |||||
gtactatagtctatagctaatatagtctgtatatctgaaatatttggaattgaagc--cttgctaaatgcac---attttaaca-tatggtttagTTGTATGCGCCAACAACTTTGGCACCTGGTCGTGACTTCTGGTTGCTGCGTTACACATCACTTTTGGAGGACGGTAGTTTTGTG
upper sequence: Vv04s0008g03250.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G09000.1 (Glycine max), 3'ss of exon 3
---------------------------------------------------------------------------------------gtatgtggtaattgttttgtaattttatg-----tgtttcaaggtgcat--ctgcttaatgaaaaccttggattttgatggtgtgttttagCTCTATGCGCCTACAACTTTGGCACCAGCTCGTGACTTCTGGTTGCTCCGTTATACATCTGTTTTGGAGGATGGGAGTCTTGTG
| | | ||| || ||| || || | ||| | || || |||| ||| || | | | || | | || ||||| | |||||||| |||||||||||||| | |||||||||||||||||| || || ||||| |||| ||||| || |||||||||
gtactttagtctagttaatatatataatgattataatctgtatctcaataaattagtatatggaatcattgagctgctctaaatgtgatgtatctcaataaattagtataattgtgatgagtatttggaattgaattcttgctaaataaacatttcaacctgtg-tcatctggtttagTTGTATGCGCCAACAACTTTGGCACCTGGTCGTGACTTCTGGTTGCTGCGCTACACATCACTTTTAGAGGACGGTAGTCTTGTG
upper sequence: Vv04s0008g03250.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G32880.1 (Arabidopsis thaliana), 3'ss of exon 7
--------------gtatgtggtaattgttttgtaattttatgtgtttcaa---ggtgcatc-tgcttaatgaaaaccttggattttgatggtgtgttttagCTCTATGCGCCTACAACTTTGGCACCAGCTCGTGACTTCTGGTTGCTCCGTTATACATCTGTTTTGGAGGATGGGAGTCTTGTG
| | | || ||| || ||| | ||| | || ||| | | || | | |||| |||||||| ||||| ||||||||||||||||||||||| |||| ||||| |||||||| |||| || ||||| ||||||
gtattgatgatcaagaaccctaaagatgattttatcttcagcacaaaccaaataatcgaatcacacaaaactaaattttcctctctttctttctcatgaaagCTTTATGCGCCGACAACACTGGCACCAGCTCGTGACTTCTGGATGCTACGTTACACATCTGTAATGGAAGACGGGAGCCTTGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtttcaaggtgcatctgcttaatgaaaaccttggattttgatggtgtgttttagCTCTATGCGCCTACAACTTTGGCACCAGCTCGTGACTTCTGGTTGCTCCGTTATACATCTGTTTTGGAGGATGGGAGTCTTGTG
ttttgat putative branch site (score: 4)
ttaatgaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtggtaattgttttgtaattttatgtgtttcaaggtgcatctgcttaatgaaaaccttggattttgatggtgtgttttagCTCTATGCGCCTACAACTTTGGCACCAGCTCGTGACTTCTGGTTGCTCCGTTATACATCTGTTTTGGAGGATGGGAGTCTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG