1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atcttaagaatatgaatcctgactccaagatgtttgtcatgccattgttttatcaagctgttgttgtttgaataattctctttctctctctttctgacagAAATCGGATCCTCCAAGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTTGGCTGTGCTATAAG
species | Vitis vinifera |
transcript | Vv04s0008g03180.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTAATACCCATTGCAGAGAATTGTATGCAAGTAGTTTGTGAAATCAAAG AAATTGGATCCTCCAAGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTTEST: gi|71856752|gb|DT005807.1|DT005807
genomic: TTTAATACCCATTGCAGAGAATTGTATGCAAGTAGTTTGTGAAATCAAAGgtaatcccat ... tttctgacagAAATCGGATCCTCCAAGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTT
EST: TTTAATACCCATTGCAGAGAATTGTATGCAAGTAGTTTGTGAAATCAAAG AAATTGGATCCTCCAAGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTTEST: gi|32267964|gb|CD717123.1|CD717123
genomic: TTTAATACCCATTGCAGAGAATTGTATGCAAGTAGTTTGTGAAATCAAAGgtaatcccat ... tttctgacagAAATCGGATCCTCCAAGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTT
EST: TTTAATACCCATTGCAGAGAATTGTATGCAAGTAGTTTGTGAAATCAAAG AAATTGGATCCTCCAAGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTTEST: gi|34417073|gb|CF415827.1|CF415827
genomic: TTTAATACCCATTGCAGAGAATTGTATGCAAGTAGTTTGTGAAATCAAAGgtaatcccat ... tttctgacagAAATCGGATCCTCCAAGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTT
EST: ATTGTATGCAAGTAGTTTGT-AAATCAAAG AAATCGGATCCTCCAAG-TTTTTAGGCTGGATGACTCAAAGGTTTTAGCTT
genomic: ATTGTATGCAAGTAGTTTGTGAAATCAAAGgtaatcccat ... tttctgacagAAATCGGATCCTCCAAGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTT
tgttttatcaagctgttgttgtttgaataattctctttctctctctttctgacagAAATCGGATCCTCCAAGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTTGGCTGTGCTATAAG
taattctctttctctc CT-rich tract
ttgtttgaataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcttaagaatatgaatcctgactccaagatgtttgtcatgccattgttttatcaagctgttgttgtttgaataattctctttctctctctttctgacagAAATCGGATCCTCCAAGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTTGGCTGTGCTATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - -aagaata
- - - - - - tgaatcc
- - - - - - - - - - gactcca
- - - - - - - - - - - - - - - - - - tcatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - tcaagct