Sequence
atgc intronic sequence ATGC exonic sequence...acacaaaaaaaataaataaataaataaaataaaataaaagtagagacctttttaaatatttcttgcatataactaagtttgattcaaatgtgatttgcagTGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTCTACTACACTAAATTCAAGCTTTACTGCAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g02630.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G149969_T02 (Zea mays), 3'ss of exon 6
acacaaaaaaaataaataaataaataaaataaa---ataaaagtagagacctttttaaatatttcttgcatataacta-agtttgattcaaatgtgatttgcagTGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTCTACTACACTAAATTCAAGCTTTACTGCAGG
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aatttaaagatttatttccccaaatgcattgaatttttgaggtttgtatggactccaaata---ctgaaatgtctctacaataccattcct-tgaacatcgcagTGGTTCTCAATGAAGCGACAACATGCAATGGTGGTGATTGCAGACAGTCTTTATTACTCAAAATTCAGGCTTTACTGCAGG
upper sequence: Vv04s0008g02630.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G29670.1 (Glycine max), 3'ss of exon 6
acacaaaaaaaataaataaataaataaaataaaataaaagtag-agacctttttaaatatttcttgcatataactaagtttgattcaaatgtgatt--tgcagTGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTCTACTACACTAAATTCAAGCTTTACTGCAGG
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---caagaaaaatgggttttatattacaaataaagaattgtaggaaaccattgaaaacttttctgccatgcagctgatttggatcttgtggtttctcatgcagTGGTTCTCAATGAAACGGCAGCATGCTATAATAGTTATGGCAGATAGTCTCTATTTTACAAAATTCAAGCACCATTGCAGG
upper sequence: Vv04s0008g02630.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA14G17110.1 (Glycine max), 3'ss of exon 6
acacaaaaaaaataaataa-ataaataaaataaaataaaagtagagacctttttaaatatttcttgcatataactaagtttgattcaaatgtgatt--tgcagTGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTCTACTACACTAAATTCAAGCTTTACTGCAGG
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---caagaaaattgggttttatattacaaataaagaattgtaaggaaccattgaaaacttttctgccatgcagctgatttggatcttgtggtttctcatgcagTGGTTCTCAATGAAACGGCAGCATGCTATTATAGTTATGGCAGATAGTCTCTATTTTACAAAATTCAAGCACCATTGCAGG
upper sequence: Vv04s0008g02630.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G31350.2 (Arabidopsis thaliana), 3'ss of exon 6
acacaaaaaaaataaataaataaataaaataaaataaaagtagagacctttttaaatatttcttgcatataactaagtttgatt-caaatgtgatttgcagTGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTCTACTACACTAAATTCAAGCTTTACTGCAGG
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-tttgcttctcattcctgataatgatggctgaatttcttttcccgttagttctatataaccttgacatgttcccgtgcgtctttataatcatctttttcagTGGTTTTCAATGAAGAGGAGACATGCTATAGTCGTCATGGCGGACAGCCTTTACTACACAAAATTCAAGCTTTACTGTAGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30303469|gb|CB980263.1|CB980263EST: ATCATATGATGCCTGAAGTTGAAGTTAAGGACTTCAGGAAGGGTGCACAG TGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTC
genomic: ATCATATGATGCCTGAAGTTGAAGTTAAGGACTTCAGGAAGGGTGCACAGgtatgttctt ... tgatttgcagTGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acctttttaaatatttcttgcatataactaagtttgattcaaatgtgatttgcagTGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTCTACTACACTAAATTCAAGCTTTACTGCAGG
tttaaatatttcttgc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acacaaaaaaaataaataaataaataaaataaaataaaagtagagacctttttaaatatttcttgcatataactaagtttgattcaaatgtgatttgcagTGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTCTACTACACTAAATTCAAGCTTTACTGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - aaaaaaa
- - - - aaaataa
- - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgcat