Sequence
atgc intronic sequence ATGC exonic sequencegtaagctgataacattattttagtttgttagaataggattgaagtgttgacttgggaaagtatggtgtcacttttctctcaatttttctgattttgactcatattttaatcctatacatgcagTCTGTTTTTGAGAATAGCTTAATGCAACACCATGTTGCACTTCCCCCTGATGCTATGGGAAAGATCACTTACATAGCACCACCTGGTCAATATTCACTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g02580.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G23990.1 (Glycine max), 3'ss of exon 6
gtaagctgataacattattttagtttgttagaataggattgaagtgttgacttgggaaagtatggtgtcacttttctctcaattt-ttctgattttgactcatattttaatcctataca--tgcagTCTGTTTTTGAGAATAGCTTAATGCAACACCATGTTGCACTTCCCCCTGATGCTATGGGAAAGATCACTTACATAGCACCACCTGGTCAATATTCACTAA
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----------------------gtatgttctg-tagctttttag-gttatcttg------taagctgttccttttttgtttatcggttcttttctaaatctttgtgtgaattatttactattgcagACTGTTTTTGAGAACAGTCTAATGCAACACCATATTGCACTTCCTCCTGATAACATGGGAAAGATTACCTACATTGCACCACCTGGCCAATATTCCATAA
upper sequence: Vv04s0008g02580.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G00430.1 (Glycine max), 3'ss of exon 6
gtaagctgataacattattttagtttgttagaataggattgaagtgttgacttgggaaagtatggtgtcacttttctctcaatttttctgattttga--ctcatattttaatcctataca--tgcagTCTGTTTTTGAGAATAGCTTAATGCAACACCATGTTGCACTTCCCCCTGATGCTATGGGAAAGATCACTTACATAGCACCACCTGGTCAATATTCACTAA
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------------------------------gtatgttatgtagcctttcagttatcgt-gtaagctgttccttttttgtttattggtttttttctaaatcttttgtgtgaattatttactattgcagACTGTTTTTGAGAACAGTCTAATGCAACACCATATTGCACTTCCTCCTGATAACATGGGAAAGATTACCTACATTGCACCACCTGGCCAATATTCCTTAC
upper sequence: Vv04s0008g02580.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G78900.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagctgataa--cattattttagtttgtt----agaataggattgaagtgttgacttgggaaagtatggtgtcacttttctctcaatttttctgattttgactcatattttaatcctatacatgcagTCTGTTTTTGAGAATAGCTTAATGCAACACCATGTTGCACTTCCCCCTGATGCTATGGGAAAGATCACTTACATAGCACCACCTGGTCAATATTCACTAA
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gtaagtttattggtctcctctttaatctgcttttgacaagggaatctatttacacagttaccgtggtgtttcccttgtttacactgggaatagttttttctgaaagtcaaattaaactttggaatgcagACTGTCTTTGAGAACACTTTGATGAATCACCTCGTTGCCCTTCCTCCGGATGCCATGGGGAAGATCACTTACATTGCTCCAGCTGGTCAATATTCGCTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cacttttctctcaatttttctgattttgactcatattttaatcctatacatgcagTCTGTTTTTGAGAATAGCTTAATGCAACACCATGTTGCACTTCCCCCTGATGCTATGGGAAAGATCACTTACATAGCACCACCTGGTCAATATTCACTAA
ttttaat putative branch site (score: 3)
atattttaatcctata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagctgataacattattttagtttgttagaataggattgaagtgttgacttgggaaagtatggtgtcacttttctctcaatttttctgattttgactcatattttaatcctatacatgcagTCTGTTTTTGAGAATAGCTTAATGCAACACCATGTTGCACTTCCCCCTGATGCTATGGGAAAGATCACTTACATAGCACCACCTGGTCAATATTCACTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA