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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaatacttgaaagggtgtgttggttatttccctgtttgcaaaatataagtagtacctagtgtcagctgcttaatagggatatgcatatttttttatcatgagatgagttgaaatcatgtattcaaagctagaagagatgagatgtaatctttgtattcaaagcttactgtttttcttgaacagGTTTTGTATGATGGGTCAAGGGAATTGGCTCAAAATACAACGGATTCCTCAAAGTATGCTTTGTCCATTGAAAATAAG

Basic information

species Vitis vinifera
transcript Vv04s0008g02040.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g02040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G05960.1 (Glycine max), 3'ss of exon 6
gtatgcaatacttgaaagggtgtgttggttatttccctgtttgcaaaatataagtagtacctagtgtcagctgcttaatagggatatgcatatttttttatcatgagatgagttgaaatcatgtattcaaagctagaagagatgagatgtaatctttgtattcaaagcttactgtttttcttgaacagGTTTTGTATGATGGGTCAAGGGAATTGGCTCAAAATACAACGGATTCCTCAAAGTATGCTTTGTCCATTGAAAATAAG
||||||||||||||||||||||||||| ||||||  || ||   || | | |  ||      |||||| |||| |          |   || ||||         |  ||||||||  ||        | ||||||  ||||  |  ||||||| ||   ||  |  |||  ||| ||     |||||||  || ||||||||||||  || ||||| || |||      ||||| ||||||||||   | ||   ||||||  ||
gtatgcaatacttgaaagggtgtgttgattatttttctcttaaaaatacagagttaa-----agtgtccgctgttcgtagttagaaaaaatgtttt---------aagtgagttgagttc-----catagagctagctgaga-aaactgtaatccttagtttgca--cttgatgtgtta---aaacagGTACTGCATGATGGGTCAAAAGAGTTGGCGCAGAATGATGTTGATTCTTCAAAGTATGTAATATCTCATGAAAACCAG

upper sequence: Vv04s0008g02040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G05960.1 (Glycine max), 3'ss of exon 5
gtatgcaatacttgaaagggtgtgttggttatttccctgtttgcaaaatataagtagtacctagtgtcagctgcttaatagggatatgcatatttttttatcatgagatgagttgaaatcatgtattcaaagctagaagagatgagatgtaatctttgtattcaaagcttactgtttttcttgaacagGTTTTGTATGATGGGTCAAGGGAATTGGCTCAAAATACAACGGATTCCTCAAAGTATGCTTTGTCCATTGAAAATAAG
||||||||||||||||||||||||||| ||||||  || ||   |||  | |  ||      ||||||  ||| | | |||   | || | |  | |||    |||| ||||||     | |      | |||||   ||||  |  ||||||| || | |    | |||  ||| ||     |||||||  || |||||||||| |  || ||||| || |||      ||||| ||||||||||   | || | ||||||  ||
gtatgcaatacttgaaagggtgtgttgattatttttctcttaaaaaagcagagttaa-----agtgtccactgttca-tag---tttgaaaaaatgttttatgtgagttgagtt----ccgt------agagctacccgaga-aaactgtaatcctt-tgtctgta-cttgatgtgtta---aaacagGTACTGCATGATGGGTCGAAAGAGTTGGCGCAGAATGACTTTGATTCTTCAAAGTATGTAATATCTAATGAAAACCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaagagatgagatgtaatctttgtattcaaagcttactgtttttcttgaacagGTTTTGTATGATGGGTCAAGGGAATTGGCTCAAAATACAACGGATTCCTCAAAGTATGCTTTGTCCATTGAAAATAAG
                                agcttac  putative branch site (score: 3)
                                  cttactgtttttctt  CT-rich tract
                taatcttt  TA-rich tract