Sequence
atgc intronic sequence ATGC exonic sequencegtaagtttccatttccacctcatctcctttccttctaatttaatgatgtaatgtcttgggtcatgactcttcaaagcattggttccagGGATCTGGCACAGAATAGATTGAGTGGAGAAATACCCAGGCTTATATACTGGAATGAAGTTTTGCAGTATCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA14G11220.1 (Glycine max), 3'ss of exon 6
gtaagtttccatt---tccacctcatctcctttcctt----ctaatttaatgatgtaatgtcttgggtcatgactcttcaaagcattggttccagGGATCTGGCACAGAATAGATTGAGTGGAGAAATACCCAGGCTTATATACTGGAATGAAGTTTTGCAGTATCT
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gtaagtcattattgtatttcccatttctcctccccataacactaattttaggttctataattgacattctcgactcctggaaa-atgctctccagAGACCTGGCTCAAAATAATCTTAGCGGAGAAATACCAAGGCTTATATATTGGAACGAAGTATTGCAGTATCT
upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G34380.1 (Glycine max), 3'ss of exon 7
-------------gtaagtttccatttccacctcatctcctt-tccttctaatttaatgatgtaatgtcttgggtcatgactcttcaaagcattggttccagGGATCTGGCACAGAATAGATTGAGTGGAGAAATACCCAGGCTTATATACTGGAATGAAGTTTTGCAGTATCT
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gtaagtcattcttgtatttctcatttcccatttctcctcctcataacactaattttagtttctataactgacattctcggctcaataaaa-atgctttccagAGACCTGGCTCAAAATAATCTTAGCGGAGAAATACCAAGGCTTATATATTGGAACGAAGTTTTGCAATATCT
upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G05900.1 (Glycine max), 3'ss of exon 7
gtaagtttccatttccacctcatctcc------tttccttctaatttaatgatgtaatgtct-tgggtca-tgactcttcaaagca---ttggttccagGGATCTGGCACAGAATAGATTGAGTGGAGAAATACCCAGGCTTATATACTGGAATGAAGTTTTGCAGTATCT
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gtaagttactttttggttttctcttcagaaggatgactttagtatctataactatcatagctatcattcactaaattttgaaaactggttctgttccagAGACCTGGCACAGAATAATCTTAGCGGGGAGATACCAAGACTTATATATTGGAATGAAGTTTTGCAATATCT
upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G26330.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagtttccatttccacctcatctcctttccttctaatttaatgatgtaatgtcttgggtcatgactcttcaaagcattggttccagGGATCTGGCACAGAATAGATTGAGTGGAGAAATACCCAGGCTTATATACTGGAATGAAGTTTTGCAGTATCT
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gtatgttccccatgat-tcttacatgtcttactact--tttagctatatag-gt----gatcatacatgtgtaa--tttcaattgcagGGACTTGGCACAGAATAAACTCAGTGGTGAGATACCAAGACTTATTTACTGGAATGAAGTTCTTCAGTATCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctaatttaatgatgtaatgtcttgggtcatgactcttcaaagcattggttccagGGATCTGGCACAGAATAGATTGAGTGGAGAAATACCCAGGCTTATATACTGGAATGAAGTTTTGCAGTATCT
tttaatgatgtaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtttccatttccacctcatctcctttccttctaatttaatgatgtaatgtcttgggtcatgactcttcaaagcattggttccagGGATCTGGCACAGAATAGATTGAGTGGAGAAATACCCAGGCTTATATACTGGAATGAAGTTTTGCAGTATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA