1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agaaaattatgttccaattatgctggggacacaagacaatcagagacaaaccaatatgtgatatttctaacatcttctgtcttttggttgaattttgcagCAATACACTCCGGCCCATGAGCATGTTGCTTCTCATGAAAGCTGGCAGATGGAGCAACAGGGCGAGTATCCAAAGTCGCAAAATCCACAGTGAAATTCAT
species | Vitis vinifera |
transcript | Vv04s0008g01040.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATATAGTTGTCTCTGCTCCAACAGCCAAAGAACTTCTAGTAAAGATGGAG CAATACACTCCGGCCCATGAGCATGTTGCTTCTCATGAAAGCTGGCAGATGEST: gi|110424568|gb|EC990932.1|EC990932
genomic: ATATAGTTGTCTCTGCTCCAACAGCCAAAGAACTTCTAGTAAAGATGGAGgtattgcccc ... aattttgcagCAATACACTCCGGCCCATGAGCATGTTGCTTCTCATGAAAGCTGGCAGATG
EST: ATATAGTTGTCTCTGCTCCAACAGCCAAAGAACTTCTAGTAAAGATGGAG CAATACACTCCGGCCCATGAGCATGTTGCTTCTCATGAAAGCTGGCAGATGEST: gi|110396809|gb|EC962509.1|EC962509
genomic: ATATAGTTGTCTCTGCTCCAACAGCCAAAGAACTTCTAGTAAAGATGGAGgtattgcccc ... aattttgcagCAATACACTCCGGCCCATGAGCATGTTGCTTCTCATGAAAGCTGGCAGATG
EST: ATATAGTTGTCTCTGCTCCAACAGCCAAAGAACTTCTAGTAAAGATGGAG CAATACACTCCGGCCCATGAGCATGTTGCTTCTCATGAAAGCTGGCAGATG
genomic: ATATAGTTGTCTCTGCTCCAACAGCCAAAGAACTTCTAGTAAAGATGGAGgtattgcccc ... aattttgcagCAATACACTCCGGCCCATGAGCATGTTGCTTCTCATGAAAGCTGGCAGATG
acaaaccaatatgtgatatttctaacatcttctgtcttttggttgaattttgcagCAATACACTCCGGCCCATGAGCATGTTGCTTCTCATGAAAGCTGGCAGATGGAGCAACAGGGCGAGTATCCAAAGTCGCAAAATCCACAGTGAAATTCAT
ttctaac putative branch site (score: 1)
aatatgtgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaaattatgttccaattatgctggggacacaagacaatcagagacaaaccaatatgtgatatttctaacatcttctgtcttttggttgaattttgcagCAATACACTCCGGCCCATGAGCATGTTGCTTCTCATGAAAGCTGGCAGATGGAGCAACAGGGCGAGTATCCAAAGTCGCAAAATCCACAGTGAAATTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
agaaaat
- - - - - - - - - tatgctg
- - - - - - - - - - - - - - acacaag
- - - - - - - - - - - - - - - - - - -aatcaga
- - - - - - - - - - - - - - - - - - - - - - - caaacca