1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtgtacaaataattggactttgagcaaatgctcatattggcaagatcctctaaccagtggtttctgaggaattgataaccatcttatctgtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCAGCTGCAGACGATGTACGTTTCCTTCTTTACATCTATCACAAGATGATGG
species | Vitis vinifera |
transcript | Vv04s0008g00650.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCAEST: gi|71863241|gb|DT012296.1|DT012296
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTEST: gi|71865061|gb|DT014116.1|DT014116
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGT
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGEST: gi|110722833|gb|EE099455.1|EE099455
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATG
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCAEST: gi|30129707|gb|CB915046.1|CB915046
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCAEST: gi|161721247|gb|FC070753.1|FC070753
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTGCGGGCAEST: gi|161717589|gb|FC066263.1|FC066263
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTGCGGGCAEST: gi|161714427|gb|FC063853.1|FC063853
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTGCGGGCAEST: gi|110388273|gb|EC953007.1|EC953007
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTGCGGGCAEST: gi|26267080|gb|CA818143.1|CA818143
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTGCGGGCAEST: gi|71883347|gb|DT032402.1|DT032402
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTGCGGGCAEST: gi|71864703|gb|DT013758.1|DT013758
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCAEST: gi|110365546|gb|EC928709.1|EC928709
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTGCGGGCAEST: gi|71859768|gb|DT008823.1|DT008823
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTEST: gi|161717170|gb|FC066568.1|FC066568
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTT
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCAEST: gi|26265140|gb|CA816203.1|CA816203
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTGCGGGCAEST: gi|110722784|gb|EE099350.1|EE099350
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAAGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCAEST: gi|110385784|gb|EC950339.1|EC950339
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTGCGGGCAEST: gi|110724849|gb|EE101037.1|EE101037
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCAEST: gi|161715652|gb|FC066797.1|FC066797
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCAEST: gi|110720108|gb|EE095742.1|EE095742
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAAGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGGAEST: gi|34542987|gb|CF511219.1|CF511219
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTGCGGGCAEST: gi|161719650|gb|FC067994.1|FC067994
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTGCGGGCAEST: gi|161721651|gb|FC069781.1|FC069781
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAA AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCAEST: gi|33409202|gb|CF214829.1|CF214829
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTGCGGGCAEST: gi|110367167|gb|EC931093.1|EC931093
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
EST: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAG AACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
genomic: GTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGgtttgttcct ... gtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCA
atcctctaaccagtggtttctgaggaattgataaccatcttatctgtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCAGCTGCAGACGATGTACGTTTCCTTCTTTACATCTATCACAAGATGATGG
tgataac putative branch site (score: 2)
tcatccc putative PPT
aattgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgtacaaataattggactttgagcaaatgctcatattggcaagatcctctaaccagtggtttctgaggaattgataaccatcttatctgtcatcccagAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCAGCTGCAGACGATGTACGTTTCCTTCTTTACATCTATCACAAGATGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - caaataa
- - - - - - - - - - - - - -aatgctc
- - - - - - - - - - - - - - - - - - - - - - - -cctctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataacca