1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aggccttcaatataatgatccttgaaaactatctgagcacaactttcttttcacttgcttttttcatcatgttagtgaattttttgtttacttggatcagAAAGAAGCAGTGTATGGCTTGACAGAGATTTTGAGGGAAGAAATTAAAGCTGCACGTCTTGTTGCCAATCCTGGCTGTTATCCTACAACCATTCAGCTTC
species | Vitis vinifera |
transcript | Vv03s0063g01110.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGAATATGAAGAATGGTATGGTCAGCCACACAGAGCCCCAGATTTGCAG AAAGAAGCAGTGTATGGCTTGACAGAGATTTTGAGGGAAGAAATTAAAGCTEST: gi|27583381|gb|CB006076.1|CB006076
genomic: CTGAATATGAAGAATGGTATGGTCAGCCACACAGAGCCCCAGATTTGCAGgtaggtaatt ... cttggatcagAAAGAAGCAGTGTATGGCTTGACAGAGATTTTGAGGGAAGAAATTAAAGCT
EST: CACAGAGCCCCAGATTTGCAG AAAGAAGCAGTGTATGGCTTGACAGAGATTTTGAGGGAAGAAATTAAAGCT
genomic: CACAGAGCCCCAGATTTGCAGgtaggtaatt ... cttggatcagAAAGAAGCAGTGTATGGCTTGACAGAGATTTTGAGGGAAGAAATTAAAGCT
tcttttcacttgcttttttcatcatgttagtgaattttttgtttacttggatcagAAAGAAGCAGTGTATGGCTTGACAGAGATTTTGAGGGAAGAAATTAAAGCTGCACGTCTTGTTGCCAATCCTGGCTGTTATCCTACAACCATTCAGCTTC
ttttttgtttactt CT-rich tract
aattttttgtttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggccttcaatataatgatccttgaaaactatctgagcacaactttcttttcacttgcttttttcatcatgttagtgaattttttgtttacttggatcagAAAGAAGCAGTGTATGGCTTGACAGAGATTTTGAGGGAAGAAATTAAAGCTGCACGTCTTGTTGCCAATCCTGGCTGTTATCCTACAACCATTCAGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- gccttca
- - - - - - - - - - - - aaaacta