Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcaacctttttctgttgacatgataagctatagttgtaatccatttcaaaattgatataggtgactgaatatgtgccctggatcttgaactctcttaactgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTC

Basic information

species Vitis vinifera
transcript Vv03s0038g04470.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os02g04020.1 (Oryza sativa), 3'ss of exon 6
gtattcaacctttttctgttgacatgataagctatagttgtaatccatttcaaaattgatataggtgactgaatatgtgccctggatcttgaactctcttaactgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTC
||| |      |  ||  ||  | |||||||| | |||  |     | ||         | | | | |||   | | |  | |||           | |||  || | ||||| || |  |||||||||||| ||||||||||||| || ||| ||||  | ||||||||||| ||| | ||||| || || ||||| ||||||||||| |
gtactgtcttctactcaattcgc-tgataagc-acagtactgtgttaattt--------tcttgctaact---tttttttcgtgg-----------ttttatgtgtt-cagACCCTATATCAAATGTTTATTGTCAATGCTGGTCCGGGGTTTCGGCTCTTATGGAACACTGTGAAGTCCTTTCTGGACCCAAAAACCACTTCCAAGATAC

upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G171354_T03 (Zea mays), 3'ss of exon 6
gtattcaacctttttctgttgacatgataagctatagttgtaatccatttcaaaattgatataggtgactgaatatgtgccctggatcttgaactctcttaactgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTC
                                |||     | ||   ||| | | |   | | | ||  |   |   ||   |  ||   |     |  |  |  || |||||||| | ||||||||||||| ||||||||||||| || ||  |||| || ||||||||||| ||| | ||||| ||||||||||| ||  ||||||| |
-------------------------------gtatgagcctcattttttttacactctcttttgttgtttttttgcttggaatatattgggttaatttgttgcatctccagACTCTATACCAAATGTTTATTGTCAATGCTGGTCCGGGTTTCCGGCTACTATGGAACACTGTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATAC

upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G073571_T03 (Zea mays), 3'ss of exon 5
gtattcaacctttttctgttgacatgataagctatagttgtaatccatttcaaaattgatataggtgactgaatatgtgccctggatcttgaactctcttaactgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTC
                 ||         ||   ||  ||  | |   || |    ||  | | | |    |||||| |    ||| |  | |  | || || || |   ||||||| | ||||||||||||  ||||||||||||| |||||  || | || ||||||||||| ||| | || || ||||||||||| ||  ||||||| |
-----------------gtatgagcctcaattcatttttacactttgttgctgtttttttcttgcttg--gaatatat----tgggt--taatttgtcgtatctcc---agACTCTATACCAAATGTTTATCGTCAATGCTGGTCCGGGCTTCCGGTTACTATGGAACACTGTGAAGTCCTTCCTTGATCCCAAAACGACCGCCAAGATAC

upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G01220.1 (Glycine max), 3'ss of exon 5
--------------------------gtattcaacctttttctgttgacatgataagctatagttgtaatccatttcaaaattgatataggtgactgaatatgtgccctggatcttgaactctctta--actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTC
                          ||| | ||    | | |  |    ||  | |||    |||| |   ||| |||| | || | | |  |    ||     |  ||||      | ||| |||  | || | |||||||| ||||||||||||||||| |||||||| ||||| ||||||||| | ||||||||||| ||| ||||||| ||||||||||||||||| |||||||
gtgtgttgtcttgttccctgtcacgtgtaattaattgctattttct--tttggaatgctggttttgtcagttattgcaaattcgaaagatgatatactatggtaacagtggactgatgattcttttattaatgatacagACTCTTTGCCAAATGTTTATTATAAATGCTGGGCCTGGATTTAGGCTGTTGTGGAACACTGTCAAGTCTTTTCTCGATCCCAAAACAACTTCTAAGATTC

upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G01260.1 (Glycine max), 3'ss of exon 5
-----------------gtattcaacctttttctgttgaca--tgataagctatagttgtaatccatttcaaaattgatataggtgactgaatatgtgccctggatcttgaactctctta--actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTC
                  | |  ||   ||| || ||  |   ||  | ||||   |||| |   ||| |||| |  |   | |  |    |||       |||| |    | ||| |||  | |  | |||||||| ||||||||||||||||| |||||||| ||||| ||||||||| | |||| |||||| ||| ||||||| ||||||||||||||||| |||||||
gtgtgttgtcttgttccctgtgtaattgtttgctattttcttttggaatgctagttttgtcagttattgcaaattcaaatgatgatatcctatagtcagaatggaccaatgattcttttattaataatacagACTCTTTGCCAAATGTTTATTATAAATGCTGGGCCTGGATTTAGGCTGTTGTGGAGCACTGTCAAGTCTTTTCTCGATCCCAAAACAACTTCTAAGATTC

upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G12260.1 (Glycine max), 3'ss of exon 5
--------------------------------gtattcaacctt-tttctgttgacatgataagctatagttgtaatccatttcaaaattgatataggtgactgaatatgtgccctggatcttgaactctctta--actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTC
                                |   | |   |  ||||    || ||   ||  || | ||||||   |   ||      |        |||   | ||     ||  |  | |  ||||||   | || | ||||||||||||||||||||||| || |||||||| || || |||||| |||| ||||||||||| ||| |||| || ||||||||||||||||| |||||||
gtgagtaacactgccggtttctgtgtattatggcccttattttgatttcatccgatataggaaattaaaattgtaaagaagaacatgtactaaggtctcaactttttctgattattgatttgttatttctcttcttaatgatacagACTCTCTGCCAAATGTTTATCATAAATGCTGGACCGGGATTTAGGTTGCTATGGAACACTGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATTC

upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G04460.1 (Glycine max), 3'ss of exon 5
----------------------------------gtattcaacctttttctgttgacatgataagctata-gttgtaatccatttcaaaattgatataggtgactgaatatgtgcc----ctggatcttgaa---------ctctcttaactgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTC
                                    |||   ||  ||  | ||||  | ||  | |||| |   | |    |||  |||     ||| ||       | |   |     |||  | || |          || | || | || | ||||||||||||||||||||||| || |||||||| ||||| |||||| |||| ||||||||||| ||| |||| || |||||||| |||||||| |||||||
gtgtgtaacactgtcggtttctgtgtattttgttacattacgccccttgtt-ttgatttcatcggttatatgaaattaaaagtttttaaagaagaatatgtactaaggtctcaactattgctgattttttattttttatttctttttttaatgatacagACTCTCTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTATGGAACACTGTCAAGTCTTTCCTTGATCCCAAGACAACTTCAAAGATTC

upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G21520.1 (Arabidopsis thaliana), 3'ss of exon 4
gtattcaacctttttctgttgacatgataagctatagttgtaatccatttcaaaattgatataggtgactgaatatgtgccctggatcttgaactctcttaactgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTC
                           ||     || ||| |     | | | | ||||| |  |  |   |||      | ||| | |||   | | | |     |||||||||||  ||||||||||||||||||||| || ||||| |||||||| |||||||||||||| ||||  ||||| || || || ||| || | || ||||
--------------------------gtattagttaattggagct--tctaatacttgatctcaggtatcaaatgctaatcttggct-ttgtggtatttca-----tgcagACTCTCCACCAAATGTTTATTATCAATGCAGGGCCTGGATTTAGGCTACTCTGGAACACTGTCAAGAGCTTTCTTGACCCTAAGACATCTGCTAAAATTC

upper sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ23906 (Selaginella moellendorffii), 3'ss of exon 4
gtattcaacctttttctgttgacatgataagctatagttgtaatccatttcaaaattgatataggtgactgaatatgtgccctggatcttgaactctcttaactgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTC
                                                        | |    | || ||  |  | ||  ||| |    |||   | || | || |||||||| |   | |  | |||||||||||||||||| |||| || |||||| | |||||||| || |||   || |||||||||||||| ||||| || ||  
-------------------------------------------------------gtaagtctgttgcctttagttttgtgctgaaa--agaaacattttgattgttgcagACTTTGCACAAGCTTTTTATTATCAATGCTGGTGCTGGATTCAGGCTGTTATGGAACACAGTGAAGGGGTTCCTAGATCCCAAAACGACTTCTAAAATCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351015523|gb|FQ447352.1|FQ447352
EST:     GGGAGCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|351026236|gb|FQ428248.1|FQ428248
EST:     GGGAGCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|349822502|gb|FQ412766.1|FQ412766
EST:     GGGAGCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|351026103|gb|FQ428115.1|FQ428115
EST:     GGGAGCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|30296909|gb|CB973703.1|CB973703
EST:     TGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: TGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|351027625|gb|FQ446789.1|FQ446789
EST:     GGGAGCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|351055947|gb|FQ453408.1|FQ453408
EST:     GGGAGCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|294964977|gb|GW838780.1|GW838780
EST:     GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|349828849|gb|FQ419182.1|FQ419182
EST:     GGGAGCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|161709016|gb|FC058796.1|FC058796
EST:     GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|351040873|gb|FQ438417.1|FQ438417
EST:     GGGAGCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|349819344|gb|FQ412238.1|FQ412238
EST:     GGGAGCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|349817039|gb|FQ399786.1|FQ399786
EST:     GGGAGCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|30296834|gb|CB973628.1|CB973628
EST:     GCAGAAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|32270608|gb|CD719767.1|CD719767
EST:     GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|351024179|gb|FQ423602.1|FQ423602
EST:     GGGAGCTCATTATGCGGCTGCAGGAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|30299808|gb|CB976602.1|CB976602
EST:     GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
EST: gi|351021812|gb|FQ437197.1|FQ437197
EST:     GGGAGCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC
genomic: GGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacc ... actgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatataggtgactgaatatgtgccctggatcttgaactctcttaactgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTC
                                        tcttaac  putative branch site (score: 2)
             tgaatat  TA-rich tract