Skip to another splice site:
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 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattctattaataatgacaaagtgaatatattttgtatctttttagttcgtttttagcaattagcaaggttgaaagtttccactctatttgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCAGAGGGAAGGACTGCACTGCATTTCGCATGTGGGTATGGTGAG

Basic information

species Vitis vinifera
transcript Vv03s0038g04270.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g04270.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G47830.1 (Glycine max), 3'ss of exon 6
-ttattctat-taataatgacaaagtg-aatatattttgtatctttttagttcgtttttagcaattagcaaggttgaaagtttccactctatttgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCAGAGGGAAGGACTGCACTGCATTTCGCATGTGGGTATGGTGAG
  ||  | || || | |||  |  ||  |||  |     | |||||   ||       ||  | ||   |   |||| || |   | | ||    |   |||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||  ||||||| || ||||| ||||| |||
gctaagccatctagttatggtattgtttaatccagcccttgtctttagtgtcatcaggtatgatttgaaatatttgagagctaaaattttacacat---ttagGGCTTGAAAAATGCACTAGCCTCTGGTGCTGACAAGGATGAAGAAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAG

upper sequence: Vv03s0038g04270.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G12950.1 (Glycine max), 3'ss of exon 6
--ttattctattaataatgacaaagtgaatatattttgt-atctttttagt-tcgtttttagcaattagcaaggttgaaagtttccactctatttgtaaat-tagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCAGAGGGAAGGACTGCACTGCATTTCGCATGTGGGTATGGTGAG
   ||  || |   || | |     |   || |||  |  ||  | ||||| || ||       ||| | ||  ||  |    |  | |   |||| | || ||||| ||||| |||||||| ||| ||||||| ||||| ||||||||||||||||||||||| |||||  ||||||| || ||||| |||||||||
tgctaagctgtc--tagttatggtattgttaaattcagccattctcttagtgtcattgggtatgatttgaaatatttgagagctaaaat---tttgcacatgtagGGCTTGAAAAATGCACTAGCCGCTGGTGCTGACAAGGATGAAGAAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGTGAG

upper sequence: Vv03s0038g04270.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G17390.1 (Arabidopsis thaliana), 3'ss of exon 6
--------------------ttattctattaataatgacaaagtgaatatattttgtatctttttagttcgtttttagcaattagc-----aaggttgaaagtttccactctatttgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCAGAGGGAAGGACTGCACTGCATTTCGCATGTGGGTATGGTGAG
                    ||| ||| |      |   |  ||  |||| || |   |   |     || ||  | |   |||||     ||   |    |  |  | |   |     ||  ||||||||||   |||  | || |||||||   |||||||||||||||| || || |||||||||||  ||||||| |||||||| || || |||
gtaaactgattcatacactgttagtctctcgtgtttctgacggtctatattttatacttaagtcggaatcattgatcgaggttagctcataaactctctgtgcattgatttcctgaaccaaccagGGTTTGAAAGCTGCCTTGGCATCTGGTGGGAACAAAGATGAAGAAGACTCTGAAGGAAGGACTGCTTTGCATTTTGCATGTGGATACGGCGAG

upper sequence: Vv03s0038g04270.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G35450.5 (Arabidopsis thaliana), 3'ss of exon 6
----------ttattctattaata---atgacaaagtga-atatattttgtatcttttt-----agttcgtttttagcaatta-gcaaggttgaa---------agtttccactctatttgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCAGAGGGAAGGACTGCACTGCATTTCGCATGTGGGTATGGTGAG
          ||  |   ||||||    |||| | |||| || ||| |||  | ||  |     | || | | ||   | ||  |    ||||||          | ||    |   ||  |  |||||||||||||   |||  | || |||||||   ||||||||||||||||||| || |||||||| ||| ||||||| || ||||| || || |||
gttagactgcttcctacgttaatatgcttgaccatgtgagatttatcttgcgtgttgcttgaggaattagatgttccaagttttgttttgttgaactcgttattggatttttattcgttgattcattagGGTTTGAAAGCTGCCTTGGCATCTGGTGGTAACAAAGATGAAGAAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351024599|gb|FQ433014.1|FQ433014
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|110399605|gb|EC966118.1|EC966118
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|34550739|gb|CF518957.1|CF518957
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|110688588|gb|EE067308.1|EE067308
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|351036758|gb|FQ457471.1|FQ457471
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGGTTGAAGAATGCACTTGCCTCTGG
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGG
EST: gi|34544495|gb|CF512727.1|CF512727
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|349823637|gb|FQ415047.1|FQ415047
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|33406205|gb|CF211832.1|CF211832
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|351037169|gb|FQ457002.1|FQ457002
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAAAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|229418802|gb|GO653039.1|GO653039
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|352794442|gb|FQ481674.1|FQ481674
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCCCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|37189137|gb|CF608486.1|CF608486
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|22013539|gb|BQ798573.1|BQ798573
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|351032955|gb|FQ461844.1|FQ461844
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGC
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGC
EST: gi|110717421|gb|EE093265.1|EE093265
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|22014144|gb|BQ799178.1|BQ799178
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|34547334|gb|CF515566.1|CF515566
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|351022363|gb|FQ445138.1|FQ445138
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|161707055|gb|FC055932.1|FC055932
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGT
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGT
EST: gi|110394240|gb|EC958886.1|EC958886
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|110420469|gb|EC986743.1|EC986743
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|349813389|gb|FQ413591.1|FQ413591
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGAT
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGAT
EST: gi|110389993|gb|EC954874.1|EC954874
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|46917647|gb|CN546976.1|CN546976
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|351033302|gb|FQ446534.1|FQ446534
EST:     ATCACAGTGAATCAATTGTTCACGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAAAATGCACTTGCCTCTGG
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGG
EST: gi|110382861|gb|EC947188.1|EC947188
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|33407293|gb|CF212920.1|CF212920
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|349823548|gb|FQ414958.1|FQ414958
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|351053332|gb|FQ459200.1|FQ459200
EST:     ATCACAGTGAATCAATTGTTCATGACGCTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|34547424|gb|CF515656.1|CF515656
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|349814096|gb|FQ414276.1|FQ414276
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGCGTTGGTGATGTGGAG                         GGGTTGAAGAATGCACTTGCCTCTGGTGC
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGC
EST: gi|110379564|gb|EC944769.1|EC944769
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|351040731|gb|FQ438275.1|FQ438275
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|26262139|gb|CA813202.1|CA813202
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|110420388|gb|EC986660.1|EC986660
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|351014883|gb|FQ438083.1|FQ438083
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAATATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|351036011|gb|FQ463856.1|FQ463856
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAAAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|22012808|gb|BQ797842.1|BQ797842
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|110406474|gb|EC972047.1|EC972047
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|110369841|gb|EC934010.1|EC934010
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|351033684|gb|FQ462214.1|FQ462214
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGGTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAA
EST: gi|352789768|gb|FQ478583.1|FQ478583
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|352798420|gb|FQ480445.1|FQ480445
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTG
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTG
EST: gi|110383518|gb|EC947896.1|EC947896
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|351029592|gb|FQ427432.1|FQ427432
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAGGAATGCACTTGCCTCTGGTGC
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGC
EST: gi|34546560|gb|CF514792.1|CF514792
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|110732697|gb|EE108209.1|EE108209
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|349811328|gb|FQ407554.1|FQ407554
EST:     CTCACCGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACCTGCCTCTGGTGCCGAC
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGAC
EST: gi|351025742|gb|FQ426756.1|FQ426756
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|26264214|gb|CA815277.1|CA815277
EST:     ATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGGTTGAAGAATGCACTTGCCTCTGATGCTGACAAAGATGAAGAAGATTCA
genomic: ATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|110423800|gb|EC990151.1|EC990151
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|22014688|gb|BQ799722.1|BQ799722
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|28965951|gb|CB344984.1|CB344984
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|349812027|gb|FQ410824.1|FQ410824
EST:     ATCACAGTGAATCAATTGTTCATGACCCTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|33406289|gb|CF211916.1|CF211916
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTC-
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|110395577|gb|EC961243.1|EC961243
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|351014637|gb|FQ437639.1|FQ437639
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|110427860|gb|EC994314.1|EC994314
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|110362021|gb|EC925527.1|EC925527
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|349820736|gb|FQ408565.1|FQ408565
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCTGACAAAGATGAAGAAGATCCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
EST: gi|110723293|gb|EE100443.1|EE100443
EST:     ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAG                         GGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA
genomic: ATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGgtataatgca ... tgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttcgtttttagcaattagcaaggttgaaagtttccactctatttgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCAGAGGGAAGGACTGCACTGCATTTCGCATGTGGGTATGGTGAG
                                tttccactctattt  CT-rich tract
                                       tctatttgtaaatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttattctattaataatgacaaagtgaatatattttgtatctttttagttcgtttttagcaattagcaaggttgaaagtttccactctatttgtaaattagGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCAGAGGGAAGGACTGCACTGCATTTCGCATGTGGGTATGGTGAG

- - - - - - - - gacaaag